Last updated on 2022-09-11 12:56:14 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 60.00 | 553.42 | 613.42 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 55.01 | 416.12 | 471.13 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 778.29 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 757.38 | NOTE | |||
| r-devel-windows-x86_64 | 1.1.0 | 80.00 | 557.00 | 637.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.0 | 51.96 | 526.13 | 578.09 | ERROR | |
| r-release-linux-x86_64 | 1.1.0 | 50.03 | 520.06 | 570.09 | NOTE | |
| r-release-macos-arm64 | 1.1.0 | 215.00 | NOTE | |||
| r-release-macos-x86_64 | 1.1.0 | 426.00 | NOTE | |||
| r-release-windows-x86_64 | 1.1.0 | 69.00 | 564.00 | 633.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.0 | 384.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 538.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 1.1.0 | 129.00 | 546.00 | 675.00 | NOTE |
Version: 1.1.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in 'clustermole-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read_gmt
> ### Title: Read a GMT file into a data frame
> ### Aliases: read_gmt
>
> ### ** Examples
>
> gmt <- "http://software.broadinstitute.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt"
> gmt_tbl <- read_gmt(gmt)
Warning in file(con, "r") :
cannot open URL 'https://www.gsea-msigdb.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt': HTTP status was '504 Gateway Timeout'
Error in file(con, "r") :
cannot open the connection to 'http://software.broadinstitute.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt'
Calls: read_gmt -> strsplit -> readLines -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [84s/118s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(clustermole)
>
> test_check("clustermole")
[1] "Calculating ranks..."
[1] "Calculating absolute values from ranks..."
[1] "Normalizing..."
[1] "Calculating ranks..."
[1] "Calculating absolute values from ranks..."
[1] "Normalizing..."
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 42 ]
== Failed tests ================================================================
-- Error (test-utils.R:3:3): read_gmt() output ---------------------------------
Error in `file(con, "r")`: cannot open the connection to 'http://software.broadinstitute.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt'
Backtrace:
x
1. \-clustermole::read_gmt(file = "http://software.broadinstitute.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt") at test-utils.R:3:2
2. +-base::strsplit(readLines(file), "\t")
3. \-base::readLines(file)
4. \-base::file(con, "r")
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 42 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘clustermole-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read_gmt
> ### Title: Read a GMT file into a data frame
> ### Aliases: read_gmt
>
> ### ** Examples
>
> gmt <- "http://software.broadinstitute.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt"
> gmt_tbl <- read_gmt(gmt)
Warning in file(con, "r") :
cannot open URL 'https://www.gsea-msigdb.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt': HTTP status was '502 Bad Gateway'
Error in file(con, "r") :
cannot open the connection to 'http://software.broadinstitute.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt'
Calls: read_gmt -> strsplit -> readLines -> file
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in 'clustermole-Ex.R' failed
The error most likely occurred in:
> ### Name: read_gmt
> ### Title: Read a GMT file into a data frame
> ### Aliases: read_gmt
>
> ### ** Examples
>
> gmt <- "http://software.broadinstitute.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt"
> gmt_tbl <- read_gmt(gmt)
Warning in file(con, "r") :
cannot open URL 'https://www.gsea-msigdb.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt': HTTP status was '502 Bad Gateway'
Error in file(con, "r") :
cannot open the connection to 'http://software.broadinstitute.org/gsea/msigdb/supplemental/scsig.all.v1.0.symbols.gmt'
Calls: read_gmt -> strsplit -> readLines -> file
Execution halted
Flavor: r-release-windows-x86_64