Last updated on 2022-09-11 12:56:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1 | 8.35 | 66.28 | 74.63 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.1 | 6.35 | 49.23 | 55.58 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.1 | 104.97 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.2 | 95.30 | OK | |||
| r-devel-windows-x86_64 | 2.1 | 18.00 | 88.00 | 106.00 | ERROR | |
| r-patched-linux-x86_64 | 2.1 | 13.81 | 60.64 | 74.45 | ERROR | |
| r-release-linux-x86_64 | 2.1 | 8.27 | 61.28 | 69.55 | ERROR | |
| r-release-macos-arm64 | 2.1 | 30.00 | OK | |||
| r-release-macos-x86_64 | 2.1 | 48.00 | OK | |||
| r-release-windows-x86_64 | 2.2 | 14.00 | 84.00 | 98.00 | OK | |
| r-oldrel-macos-arm64 | 2.1 | 33.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.1 | 41.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 2.1 | 20.00 | 87.00 | 107.00 | OK |
Version: 2.1
Check: examples
Result: ERROR
Running examples in 'ggheatmap-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ggheatmap
> ### Title: ggplot2 Version of Heatmap
> ### Aliases: ggheatmap
>
> ### ** Examples
>
> #Create data
> library(ggheatmap)
> library(tidyr)
> library(aplot)
> set.seed(123)
> df <- matrix(runif(600,0,10),ncol = 12)
> colnames(df) <- paste("sample",1:12,sep = "")
> rownames(df) <- sapply(1:50, function(x)paste(sample(LETTERS,3,replace = FALSE),collapse = ""))
> head(df)
sample1 sample2 sample3 sample4 sample5 sample6 sample7 sample8
PIK 2.875775 0.4583117 5.999890 8.474532 2.387260 2.572167 7.84575267 1.365402
KSJ 7.883051 4.4220007 3.328235 4.975273 9.623589 2.217879 0.09429905 9.674695
WBF 4.089769 7.9892485 4.886130 3.879090 6.013657 5.930457 7.79065883 5.150718
TNY 8.830174 1.2189926 9.544738 2.464490 5.150297 2.675214 7.29390652 1.630703
FRB 9.404673 5.6094798 4.829024 1.110965 4.025733 5.310704 6.30131853 6.219023
XHK 0.455565 2.0653139 8.903502 3.899944 8.802465 7.852917 4.80910830 9.859542
sample9 sample10 sample11 sample12
PIK 9.860543 5.238226 3.5360608 3.275974
KSJ 1.370675 3.498018 3.6644144 2.049387
WBF 9.053096 2.405307 2.8710013 5.693827
TNY 5.763018 0.581918 0.7997291 8.880552
FRB 3.954489 2.366197 3.6545427 5.297141
XHK 4.498025 8.900779 1.7801381 5.869587
> #example 1
> text_rows <- sample(rownames(df),3)
> p <- ggheatmap(df,scale = "row",cluster_rows = TRUE,cluster_cols = TRUE,
+ text_show_rows = text_rows)%>%
+ ggheatmap_theme(1,theme =list(
+ theme(axis.text.x = element_text(angle = 90,face = "bold"),
+ axis.text.y = element_text(colour = "red",face = "bold"))
+ ))
Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> = "none")` instead.
Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> = "none")` instead.
Warning in ggheatmap_theme(., 1, theme = list(theme(axis.text.x = element_text(angle = 90, :
Incompatible methods ("Ops.data.frame", "+.gg") for "+"
Error in ggheatmap[[1]][[num]] + theme[[i]] :
non-numeric argument to binary operator
Calls: %>% -> ggheatmap_theme
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.1
Check: examples
Result: ERROR
Running examples in ‘ggheatmap-Ex.R’ failed
The error most likely occurred in:
> ### Name: ggheatmap
> ### Title: ggplot2 Version of Heatmap
> ### Aliases: ggheatmap
>
> ### ** Examples
>
> #Create data
> library(ggheatmap)
> library(tidyr)
> library(aplot)
> set.seed(123)
> df <- matrix(runif(600,0,10),ncol = 12)
> colnames(df) <- paste("sample",1:12,sep = "")
> rownames(df) <- sapply(1:50, function(x)paste(sample(LETTERS,3,replace = FALSE),collapse = ""))
> head(df)
sample1 sample2 sample3 sample4 sample5 sample6 sample7 sample8
PIK 2.875775 0.4583117 5.999890 8.474532 2.387260 2.572167 7.84575267 1.365402
KSJ 7.883051 4.4220007 3.328235 4.975273 9.623589 2.217879 0.09429905 9.674695
WBF 4.089769 7.9892485 4.886130 3.879090 6.013657 5.930457 7.79065883 5.150718
TNY 8.830174 1.2189926 9.544738 2.464490 5.150297 2.675214 7.29390652 1.630703
FRB 9.404673 5.6094798 4.829024 1.110965 4.025733 5.310704 6.30131853 6.219023
XHK 0.455565 2.0653139 8.903502 3.899944 8.802465 7.852917 4.80910830 9.859542
sample9 sample10 sample11 sample12
PIK 9.860543 5.238226 3.5360608 3.275974
KSJ 1.370675 3.498018 3.6644144 2.049387
WBF 9.053096 2.405307 2.8710013 5.693827
TNY 5.763018 0.581918 0.7997291 8.880552
FRB 3.954489 2.366197 3.6545427 5.297141
XHK 4.498025 8.900779 1.7801381 5.869587
> #example 1
> text_rows <- sample(rownames(df),3)
> p <- ggheatmap(df,scale = "row",cluster_rows = TRUE,cluster_cols = TRUE,
+ text_show_rows = text_rows)%>%
+ ggheatmap_theme(1,theme =list(
+ theme(axis.text.x = element_text(angle = 90,face = "bold"),
+ axis.text.y = element_text(colour = "red",face = "bold"))
+ ))
Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> = "none")` instead.
Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> = "none")` instead.
Warning in ggheatmap_theme(., 1, theme = list(theme(axis.text.x = element_text(angle = 90, :
Incompatible methods ("Ops.data.frame", "+.gg") for "+"
Error in ggheatmap[[1]][[num]] + theme[[i]] :
non-numeric argument to binary operator
Calls: %>% -> ggheatmap_theme
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64