Last updated on 2022-09-11 12:56:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.9 | 9.52 | 95.61 | 105.13 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.9 | 6.67 | 70.96 | 77.63 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.9 | 134.33 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.9 | 129.56 | OK | |||
| r-devel-windows-x86_64 | 1.0.9 | 114.00 | 194.00 | 308.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.9 | 8.29 | 90.99 | 99.28 | OK | |
| r-release-linux-x86_64 | 1.0.9 | 5.18 | 88.57 | 93.75 | OK | |
| r-release-macos-arm64 | 1.0.9 | 6.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.9 | 7.00 | ERROR | |||
| r-release-windows-x86_64 | 1.0.9 | 104.00 | 189.00 | 293.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.9 | 11.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.9 | 12.00 | ERROR | |||
| r-oldrel-windows-ix86+x86_64 | 1.0.9 | 18.00 | 125.00 | 143.00 | OK |
Version: 1.0.9
Check: tests
Result: ERROR
Running 'testthat.R' [82s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(seeker)
>
> test_check('seeker')
qs v0.25.4.
trying URL 'https://www.ebi.ac.uk/arrayexpress/files/A-MEXP-724/A-MEXP-724.adf.txt'
Content type 'text/plain' length 5928030 bytes (5.7 MB)
==================================================
downloaded 5.7 MB
trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.sdrf.txt'
Content type 'text/plain' length 4803 bytes
==================================================
downloaded 4803 bytes
trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.idf.txt'
Content type 'text/plain' length 3832 bytes
==================================================
downloaded 3832 bytes
Copying raw data files
trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.raw.1.zip'
Content type 'application/zip' length 60875754 bytes (58.1 MB)
===============
downloaded 18.5 MB
Error in download.file(url, filedest, mode = "wb") :
download from 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.raw.1.zip' failed
[ FAIL 1 | WARN 3 | SKIP 22 | PASS 24 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (14)
• On Windows (8)
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure (test-array-utils.R:104:3): getNaiveEsetAe unsupported ──────────────
`filesObs` (`actual`) not equal to `filesExp` (`expected`).
actual | expected
[1] "A-MEXP-724.adf.txt" | "A-MEXP-724.adf.txt" [1]
[2] "E-MEXP-2755.idf.txt" | "E-MEXP-2755.idf.txt" [2]
[3] "E-MEXP-2755.raw.1.zip" -
[4] "E-MEXP-2755.sdrf.txt" | "E-MEXP-2755.sdrf.txt" [3]
[ FAIL 1 | WARN 3 | SKIP 22 | PASS 24 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0.9
Check: package dependencies
Result: ERROR
Packages required but not available: 'ArrayExpress', 'tximport'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64
Version: 1.0.9
Check: package dependencies
Result: ERROR
Package required but not available: ‘ArrayExpress’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.9
Check: tests
Result: ERROR
Running 'testthat.R' [81s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(seeker)
>
> test_check('seeker')
qs v0.25.4.
trying URL 'https://www.ebi.ac.uk/arrayexpress/files/A-MEXP-724/A-MEXP-724.adf.txt'
Content type 'text/plain' length 5928030 bytes (5.7 MB)
==================================================
downloaded 5.7 MB
trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.sdrf.txt'
Content type 'text/plain' length 4803 bytes
==================================================
downloaded 4803 bytes
trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.idf.txt'
Content type 'text/plain' length 3832 bytes
==================================================
downloaded 3832 bytes
Copying raw data files
trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.raw.1.zip'
Content type 'application/zip' length 60875754 bytes (58.1 MB)
================
downloaded 19.2 MB
Error in download.file(url, filedest, mode = "wb") :
download from 'https://www.ebi.ac.uk/arrayexpress/files/E-MEXP-2755/E-MEXP-2755.raw.1.zip' failed
[ FAIL 1 | WARN 3 | SKIP 22 | PASS 24 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (14)
• On Windows (8)
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure (test-array-utils.R:104:3): getNaiveEsetAe unsupported ──────────────
`filesObs` (`actual`) not equal to `filesExp` (`expected`).
actual | expected
[1] "A-MEXP-724.adf.txt" | "A-MEXP-724.adf.txt" [1]
[2] "E-MEXP-2755.idf.txt" | "E-MEXP-2755.idf.txt" [2]
[3] "E-MEXP-2755.raw.1.zip" -
[4] "E-MEXP-2755.sdrf.txt" | "E-MEXP-2755.sdrf.txt" [3]
[ FAIL 1 | WARN 3 | SKIP 22 | PASS 24 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64