DiscreteQvalue: Improved q-Values for Discrete Uniform and Homogeneous Tests
We consider a multiple testing procedure used in many modern applications which is the q-value method proposed by Storey and Tibshirani (2003), <doi:10.1073/pnas.1530509100>. The q-value method is based on the false discovery rate (FDR), hence versions of the q-value method can be defined depending on which estimator of the proportion of true null hypotheses, p0, is plugged in the FDR estimator. We implement the q-value method based on two classical pi0 estimators, and furthermore, we propose and implement three versions of the q-value method for homogeneous discrete uniform P-values based on pi0 estimators which take into account the discrete distribution of the P-values.
| Version: |
1.1 |
| Suggests: |
coin, exactRankTests |
| Published: |
2020-04-01 |
| Author: |
Marta Cousido Rocha [aut, cre],
José Carlos Soage González [ctr],
Jacobo de Uña Álvarez [aut, ths],
Sebastian Döhler [aut] |
| Maintainer: |
Marta Cousido Rocha <martacousido at uvigo.es> |
| License: |
GPL-2 |
| NeedsCompilation: |
no |
| CRAN checks: |
DiscreteQvalue results |
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