KOGMWU: Functional Summary and Meta-Analysis of Gene Expression Data
Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.
| Version: |
1.2 |
| Depends: |
R (≥ 2.10), pheatmap |
| Published: |
2019-02-19 |
| Author: |
Mikhail V. Matz |
| Maintainer: |
Mikhail V. Matz <matz at utexas.edu> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| CRAN checks: |
KOGMWU results |
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