Map2NCBI: Mapping Markers to the Nearest Genomic Feature
Allows the user to generate a list of features (gene, pseudo, RNA,
CDS, and/or UTR) directly from NCBI database for any species with a current
build available. Option to save downloaded and formatted files is available,
and the user can prioritize the feature list based on type and assembly builds
present in the current build used. The user can then use the list of features
generated or provide a list to map a set of markers (designed for SNP markers
with a single base pair position available) to the closest feature based on
the map build. This function does require map positions of the markers to be
provided and the positions should be based on the build being queried through
NCBI.
| Version: |
1.4 |
| Depends: |
R (≥ 3.5), rentrez (≥ 1.2) |
| Published: |
2020-01-24 |
| Author: |
Lauren L. Hulsman Hanna and David G. Riley |
| Maintainer: |
Lauren Hanna <Lauren.Hanna at ndsu.edu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| Citation: |
Map2NCBI citation info |
| CRAN checks: |
Map2NCBI results |
Documentation:
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