PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM)
Returns almost all features that has been extracted from Position Specific
Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length)
and 20 columns produced by 'PSI-BLAST' which is a program to produce
PSSM Matrix from multiple sequence alignment of proteins
see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some
of these features are described in Zahiri, J., et al.(2013)
<doi:10.1016/j.ygeno.2013.05.006>,
Saini, H., et al.(2016)
<doi:10.17706/jsw.11.8.756-767>,
Ding, S., et al.(2014)
<doi:10.1016/j.biochi.2013.09.013>,
Cheng, C.W., et al.(2008)
<doi:10.1186/1471-2105-9-S12-S6>,
Juan, E.Y., et al.(2009)
<doi:10.1109/CISIS.2009.194>.
| Version: |
0.2.4 |
| Depends: |
R (≥ 3.1.0) |
| Imports: |
utils, gtools, infotheo, phonTools, dtt |
| Suggests: |
testthat, spelling, waveslim, knitr, rmarkdown |
| Published: |
2022-01-04 |
| Author: |
Javad zahiri [aut],
Alireza mohammadi [aut, cre],
Saber mohammadi [aut] |
| Maintainer: |
Alireza mohammadi <alireza691111 at gmail.com> |
| BugReports: |
https://github.com/BioCool-Lab/PSSMCOOL/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/BioCool-Lab/PSSMCOOL |
| NeedsCompilation: |
no |
| Language: |
en-US |
| Materials: |
README |
| CRAN checks: |
PSSMCOOL results |
Documentation:
Downloads:
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