RareComb: Combinatorial and Statistical Analyses of Rare Events
A custom implementation of the apriori algorithm and binomial tests to identify combinations of features (genes, variants etc) significantly enriched for simultaneous mutations/events from sparse Boolean input, see Vijay Kumar Pounraja, Santhosh Girirajan (2021). Version 1.1 includes a minor adjustment to the number of combinations to be considered for multiple testing correction. This updated version is more conservative in its approach and hence more selective. <doi:10.1101/2021.10.01.462832>.
| Version: | 1.1 |
| Depends: | R (≥ 2.10) |
| Imports: | magrittr, arules, dplyr, methods, pwr, stringr, tidyr, reshape2, sqldf |
| Published: | 2022-02-24 |
| Author: | Vijay Kumar Pounraja
 [aut, cre] |
| Maintainer: | Vijay Kumar Pounraja <vijaykumar.mp at gmail.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | RareComb results |
Documentation:
| Reference manual: | RareComb.pdf |
Downloads:
| Package source: | RareComb_1.1.tar.gz |
| Windows binaries: | r-devel: RareComb_1.1.zip, r-release: RareComb_1.1.zip, r-oldrel: RareComb_1.1.zip |
| macOS binaries: | r-release (arm64): RareComb_1.1.tgz, r-oldrel (arm64): RareComb_1.1.tgz, r-release (x86_64): RareComb_1.1.tgz, r-oldrel (x86_64): RareComb_1.1.tgz |
| Old sources: | RareComb archive |
Linking:
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