RstoxData v1.2.1 (2021-07-13)

• Fix bundled miniz to not using unaligned access. This should fix CRAN’s gcc-UBSAN check.
• Bump miniz and pugixml to the latest release version.
• Fixed bug where TranslateStoxBiotic() and similar functions changed type of the data, so that translating numeric values did not work properly.

RstoxData v1.2.0 (2021-06-18)

• Final version for the release of StoX 3.1.0.

RstoxData v1.1.16 (2021-06-16)

• Fixed bug in StoxBiotic(), where date and time were borrowed from Station to Haul, which could crash due to missing values in StationKey.
• Removed interpretation of agingstructure in ICESBiotic().

RstoxData v1.1.13 (2021-06-07)

• Changed to sort in en_US_POSIX-locale in createOrderKey() using the stringi-package, which ensures platform independence while replicating sorting done by data.table.

RstoxData v1.1.9 (2021-05-21)

• Fixed bugs and added auto-detect xsd for reading zipped xml files.
• Fixed bug in StoxAcoustic for ICESAcoustic data, where log-distances with no acoustic records were deleted.
• Changed to sort in C-locale in createOrderKey() using the stringi-package, to comply with data.table’s philosophy of platform independence.

RstoxData v1.1.6 (2021-05-04)

• Added sanitizeFilter() to avoid system calls in filter.
• Removed hard coded conversions in ICESBiotic(), moving the responsibility of such conversions to the translation functions.
• Optimized createOrderKey() for faster execution.
• Renamed ReportICESAcoustic(), ReportICESBiotic() and ReportICESDatras() to WriteICESAcoustic(), WriteICESBiotic() and WriteICESDatras(), respectievly.

RstoxData v1.1.5 (2021-04-18)

• Added TranslateICESAcoustic() and TranslateICESBiotic().
• Added option of a conditional variable in DefineTranslation() and Translate*().
• Removed maturity conversion in ICESBiotic().
• Fixed format of columns of ReportICESBiotic().

RstoxData v1.1.2 (2021-03-30)

• Fixed time format of StoxAcoustic().
• Moved translation of ICESBiotic before merging levels as merging changes name of some variables.
• Changed to keep original FishID and add sequetial integers for individuals regenerated from Catch continuing from the maximum FishID.
• Added documentation of the StoxBiotic format.
• Fixed bug in LengthResolution for ICESBiotic where only the first value was used.
• Fixed bug when converting length for ICESBiotic, where values were multiplied by 100 instead of 10 from mm to cm.
• Changed TowDistance to nautical miles.
• NEW: Reading XML files with namespace prefix is now supported.
• NEW: Writing XML files (alpha) is now supported.
• Fixed bug in DateTime for ICESAcoustic files, and bug in translateOneTable() causing incomplete translation in StoxAcoustic from ICESAcoustic files.
• Added ChannelDepthUpper-ChannelDepthLower as Channel in StoxAcousic.
• Fixed bug in createOrderKey() where columns that are non-convertable to nunmeric were replaced by NA instead of being left unchanged
• Fixed bug in filterData, where propagateUpwards = TRUE did not remove rows of the higher tables if these rows were not present in the filtered table.
• Corrected type of variables of StoxAcoustic for NMDEchosounder input xml files.
• Added possible values for redefinitionTable.
• Renamed readVariableConversion() to readVariableTranslation().
• Refactored translateVariables().
• Throw error when file is missing in readXmlFile().

RstoxData v1.1.1 (2021-02-23)

• Refactor some of the reading functions to get rid of readr dependency.
• New feature: ECA integration. This is merged some time ago.

RstoxData v1.1.0 (2021-02-10)

• Final version for the release of StoX 3.0.0.

RstoxData v1.0.28 (2021-02-08)

• Renamed TowedDistance to TowDistance and EffectiveTowedDistance to EffectiveTowDistance.
• Interpret keys as numeric (possibly separated by slash) if possiible when ordering StoxAcoustic and StoxBiotic.

RstoxData v1.0.26 (2021-02-02)

• Added support for NMDBiotoic1.4 and NMDBiotoic1.1 in StoxBiotic().

RstoxData v1.0.25 (2021-01-28)

• Added DefineTranslation and TranslateAcoustic, TranslateBiotic, TranslateLanding and TranslateStoxLanding.
• Removed all Convert-functions. These may be added later.
• Added/fixed FilterLanding and FilterStoxLanding.
• Added all agedetermination variables in BioticData2GeneralSamplingHierarchy(), making these available for AddToStoxBiotic.

RstoxData v1.0.24 (2021-01-21)

• getStoxKeys(): Fix for stoxBioticObject object not found (https://github.com/StoXProject/RstoxData/issues/117).
• Remove sorting when merging in AddToStoxBiotic().
• Rename DefineStoxBioticTranslation to DefineTranslation, and the coresponding data type to Translation. Also added backward compatibility for this.

RstoxData v1.0.23 (2021-01-13)

• ICESDatras: remove reference to SurveyName and addSurveyType parameters.
• Add reporting functions for ICES exports (ReportICES*()).
• Add Intercatch data parser (parseInterCatch()).
• Add roundDrop0() to replace round() as a more robust rounding function.

RstoxData v1.0.20 (2021-01-06)

• getICESShipCode: improve ship conversion by removing the deprecated entries and sorting.
• ICESDatras: remove reference to SurveyName parameter.
• Move readr to suggests.
• Made compareICES() robust to missing internet connection.
• ICESDatras returning matrix to be written as csv by RstoxFramework::runProcess.
• Cleaned up translations using vocabulary for ICES data.
• Fixed bug with DateTime in StoxAcoustic().
• Added backwardCompatibility and removed NumberOfCores.
• Refactored the functions for writing ICESBiotic and ICESAcoustic files to include NMDBioticToICESBiotic() and to use similar methods.

RstoxData v1.0.17 (2020-11-23)

• In writeICESDatras(): Change country code ‘NOR’ to ‘NO’.
• Change the default NumberOfCores to 1L in all parallel-able functions.
• Refactor WriteICESAcoustic(), WriteICESBiotic(), WriteICESDatras() into prepareICESAcoustic(), prepareICESBiotic(), prepareICESDatras().
• Tests: do not attempt to copy file outside tempdir() in test-readXmlFile.R file.
• Github actions: Update check-full.yaml file.
• prepareICESAcoustic() to use data.table and not use format().
• Fix parallel lapplyOnCores() behavior in Windows platform.
• Remove StoxAcousticStartMiddleStopDateTime() function.

RstoxData v1.0.16 (2020-11-11)

• Prepare for CRAN submission: Remove all attempts to modify the global environment.
• Prepare for CRAN submission: Shorten the package title.
• Update variables in processDataSchema.json.
• Delete zzz.R and pkgname.R and moved the contents to RstoxData-package.R.

RstoxData v1.0.15 (2020-11-05)

• Added a NEWS.md file to track changes to the package.
• Added a cran-comments.md file for CRAN submission.
• StoxExport functions are now writing output files in tempdir().
• Various small fixes for adhering to CRAN policies.

RstoxData v1.0.14 (2020-10-29)

• New minor release.

RstoxData v1.0.14 (2020-10-01)

• Changed SampleKey to catchsampleid.

RstoxData v1.0.12 (2020-09-30)

Changes: * StoxExport: Adopt the latest unified DATRAS format. * StoxExport: Fix function for getting ICES ship code. * stoxBioticObject: Fix DateTime column from ICES Biotic has a different class compared to the one from NMD Biotic. * Documentation fix.

RstoxData v1.0.11 (2020-09-18)

• New minor release.

RstoxData v1.0.10 (2020-09-08)

• New getStoxKeys().

RstoxData v1.0.9 (2020-09-07)

Added mergeByStoxKeys().

RstoxData v1.0.8 (2020-09-01)

Added support for undefined signifDigits.

RstoxData v1.0.7 (2020-09-01)

Modified setPrecisionLevelOneDT() to keep at least 6 significant digits.

RstoxData v1.0.6 (2020-08-28)

Removed unit in variable and parameter names.

RstoxData v1.0.5 (2020-08-25)

Added IDs separated by ‘-’.

RstoxData v1.0.4 (2020-08-21)

New minor release.

RstoxData v1.0.3 (2020-08-15)

Fix small bug in DefineDataTranslation().

RstoxData v1.0.2 (2020-08-14)

Added Cruise in StoxAcoustic.

RstoxData v1.0.1.9001 (2020-07-17)

Added Cruise in the Cruise table of StoxBiotic.

RstoxData v1.0.1.9000 (2020-07-17)

Added Redefine, Translate and Convert.

RstoxData v1.0.1 (2020-07-11)

Changed AcousticCategory to character.

RstoxData v0.8.15 (2020-06-21)

Added warning for non-unique LogKey.

RstoxData v0.8.14 (2020-06-16)

Added AddStoxBioticVariables() and ConversionType in ConvertStoxBiotic.

RstoxData v0.8.13 (2020-06-11)

Add NMD Biotic format v3.1 support.

RstoxData v0.8.12 (2020-06-10)

Renamed Cores to NumberOfCores and LengthInterval to LengthIntervalCentimeters.

RstoxData v0.8.11.9000 (2020-06-08)

Filter: Filtering upwards now able to skip empty tables.

RstoxData v0.8.11 (2020-06-06)

Use Github actions.

RstoxData v0.8.10.9002 (2020-06-02)

Appveyor: fix logic.

RstoxData v0.8.10.9001 (2020-06-02)

Appveyor: test logic.

stoxData v0.8.10 (2020-06-02)

New minor release.

RstoxData v0.8.9 (2020-05-28)

Minor update to stox acoustic.

RstoxData v0.8.8 (2020-05-19)

Minor update to stox acoustic.

RstoxData v0.8.7 (2020-05-08)

Minor update to stox acoustic.

RstoxData v0.8.6.9001 (2020-05-05)

Use strict lss format.

RstoxData v0.8.6 (2020-05-04)

New features: * Add multiple data export feature: 1. ICES acoustic XML format to ICES acoustic CSV format 2. NMD biotic v3 XML format to ICES biotic CSV format 3. NMD biotic V3 XML format to NS-IBTS ICES Datras (CSV) format

Bug fixes: * Fixes ICES Acoustic/Biotic vocabulary generation when parsing ICES’s XML files

RstoxData v0.8.5 (2020-05-01)

New features: * Add filtering with upward propagation

Bugfixes: * Propagate down now able to skip empty tables (e.g., NMD v3 prey)

RstoxData v0.8.4 (2020-04-28)

New minor release.

RstoxData v0.8.3 (2020-04-16)

Add define and update variables.

RstoxData v0.8.2 (2020-04-07)

More fixes in stox acoustic.

RstoxData v0.8.1 (2020-04-02)

Fixes in stox acoustic.

RstoxData v0.8.0.9002 (2020-04-01)

Minor bug fix.

RstoxData v0.8.0 (2020-04-01)

New stox acoustic.

RstoxData v0.7.0 (2020-03-27)

Fixed bug with non-unique tables from ICESAcoustic.

RstoxData v0.7 (2020-03-26)

New stox acoustic.

RstoxData v0.6.7 (2020-03-19)

New minor release. Notable new features are the support for NMD Biotic v1.4 and ICES Biotic data input.

Changelog: * Updated README * Increment version * Add test for StoxBiotic * Add ICES Biotic to StoXBiotic format conversion * readXmlFile: Fix typo * Add support for converting NMD Biotic v1.4 format to StoxBiotic

RstoxData v0.6.6 (2020-02-11)

New minor release.

RstoxData v0.6.5 (2019-12-19)

New minor release.

Changelog: * Update README(.md) * Increment version * Refresh xsdObjects data * Fix documentation * Add verbose output switch for reading XMLs * Add tests for StoxBiotic and StoxAcoustic functions * Fix merging proses in StoxAcoustic() after correction of the column types * Correct the data types in result tables * Fix StoxBiotic function

RstoxData v0.6.4 (2019-12-18)

Updated XML reader, RstoxBiotic and RstoxAcoustic functions.

Changes: * Update DESCRIPTION * Appveyor needs the whole R version digit * Increment minor version * Update CIs to use only R 3.5 * Merge branch ‘biotic_acoustic’ of github.com:StoXProject/RstoxData into biotic_acoustic * Filter draft * XML stream read speed improvements * Result tables is now ordered * Suppress warning on utils data * metadata from readXmlFile is now a data.table * Update ICES XSDs raw and compiled data objects * Update stoxBioticObject data * Fix processBioticData length resolution converter * icesBiotic is now supported * Fix NMDBiotic v.1x xsdObjects * Added documentation for DataTypes * Merge branch ‘biotic_acoustic’ of github.com:StoXProject/RstoxData into biotic_acoustic * Added documentation for BioticData * StoxBiotic: Remove duplicate rows from SpeciesCategory table * Update data for conversion * Latitude and Latitude2 * Latest StoxBiotic updates * Merge branch ‘biotic_acoustic’ of github.com:StoXProject/RstoxData into biotic_acoustic * Minor fix * Fix (another) encoding problem * Fix documents * Update StoxBiotic conversion data and scripts * Clean up data.table warnings and inefficiencies * Removed PDFs * Add StoxAcoustic and StoxBiotic

RstoxData v0.6.3 (2019-12-06)

New minor release, various bug fixes.

RstoxData v0.6.2 (2019-11-26)

New minor release, mainly for various bug fixes.

RstoxData v0.6.1 (2019-06-21)

New Feature: Reading ICES acoustic XML files.

RstoxData v0.6.0 (2019-06-12)

Changes: * Rebrand to RstoxData. * Add support for all biotic formats.

RNMDAPI v0.5.1 (2019-05-27)

Changes: * BUG FIX: Correctly handle decimal type in the resulting tables.

RNMDAPI v0.5.0 (2019-04-09)

Changes: * Supports reading ZIP compressed XML files in the push XML parser. This function is built on top of MINIZ compression library.

RNMDAPI v0.4.0 (2019-04-06)

Changes: * Faster and more memory efficient in reading XML files. * New XML engine, all XML processing are now done inside the C++ code. * A new streaming pull parser is implemented to avoid reading the whole big XML files into memory. * Now supports landings v2 XML format.