TFMPvalue: Efficient and Accurate P-Value Computation for Position Weight Matrices

In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. Touzet and Varre (2007) <doi:10.1186/1748-7188-2-15>.

Version:	0.0.8
Depends:	R (≥ 3.0.1)
Imports:	Rcpp (≥ 0.11.1)
LinkingTo:	Rcpp
Suggests:	testthat
Published:	2018-05-16
Author:	Ge Tan
Maintainer:	Ge Tan <ge_tan at live.com>
BugReports:	https://github.com/ge11232002/TFMPvalue/issues
License:	GPL-2
Copyright:	2007 LIFL-USTL-INRIA
URL:	https://github.com/ge11232002/TFMPvalue
NeedsCompilation:	yes
SystemRequirements:	C++11
CRAN checks:	TFMPvalue results

Documentation:

Reference manual:

TFMPvalue.pdf

Downloads:

Package source:	TFMPvalue_0.0.8.tar.gz
Windows binaries:	r-devel: TFMPvalue_0.0.8.zip, r-release: TFMPvalue_0.0.8.zip, r-oldrel: TFMPvalue_0.0.8.zip
macOS binaries:	r-release (arm64): TFMPvalue_0.0.8.tgz, r-oldrel (arm64): TFMPvalue_0.0.8.tgz, r-release (x86_64): TFMPvalue_0.0.8.tgz, r-oldrel (x86_64): TFMPvalue_0.0.8.tgz
Old sources:	TFMPvalue archive

Reverse dependencies:

Reverse imports:

motifbreakR, TFBSTools, transite

Linking:

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