In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. Touzet and Varre (2007) <doi:10.1186/1748-7188-2-15>.
Version: | 0.0.8 |
Depends: | R (≥ 3.0.1) |
Imports: | Rcpp (≥ 0.11.1) |
LinkingTo: | Rcpp |
Suggests: | testthat |
Published: | 2018-05-16 |
Author: | Ge Tan |
Maintainer: | Ge Tan <ge_tan at live.com> |
BugReports: | https://github.com/ge11232002/TFMPvalue/issues |
License: | GPL-2 |
Copyright: | 2007 LIFL-USTL-INRIA |
URL: | https://github.com/ge11232002/TFMPvalue |
NeedsCompilation: | yes |
SystemRequirements: | C++11 |
CRAN checks: | TFMPvalue results |
Reference manual: | TFMPvalue.pdf |
Package source: | TFMPvalue_0.0.8.tar.gz |
Windows binaries: | r-devel: TFMPvalue_0.0.8.zip, r-release: TFMPvalue_0.0.8.zip, r-oldrel: TFMPvalue_0.0.8.zip |
macOS binaries: | r-release (arm64): TFMPvalue_0.0.8.tgz, r-oldrel (arm64): TFMPvalue_0.0.8.tgz, r-release (x86_64): TFMPvalue_0.0.8.tgz, r-oldrel (x86_64): TFMPvalue_0.0.8.tgz |
Old sources: | TFMPvalue archive |
Reverse imports: | motifbreakR, TFBSTools, transite |
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