When using the TopDom method, or this TopDom package, please cite:

Shin H, Shi Y, Dai C, Tjong H, Gong K, Alber F, Zhou XJ (2016). “TopDom: an efficient and deterministic method for identifying topological domains in genomes.” Nucleic Acids Research, 44(7), e70. doi: 10.1093/nar/gkv1505, https://doi.org/10.1093/nar/gkv1505.

Bengtsson H, Shin H, Lazaris H, Hu G, Zhou X (2020). R Package TopDom: An Efficient and Deterministic Method for Identifying Topological Domains in Genomes. R package version 0.9.1-9000, https://github.com/HenrikBengtsson/TopDom.

Corresponding BibTeX entries:

  @Article{,
    author = {Hanjun Shin and Yi Shi and Chao Dai and Harianto Tjong
      and Ke Gong and Frank Alber and Xianghong Jasmine Zhou},
    title = {TopDom: an efficient and deterministic method for
      identifying topological domains in genomes},
    journal = {Nucleic Acids Research},
    volume = {44},
    number = {7},
    pages = {e70},
    year = {2016},
    doi = {10.1093/nar/gkv1505},
    url = {https://doi.org/10.1093/nar/gkv1505},
  }

  @Manual{,
    title = {R Package TopDom: An Efficient and Deterministic Method
      for Identifying Topological Domains in Genomes},
    author = {Henrik Bengtsson and Hanjun Shin and Harris Lazaris and
      Gangqing Hu and Xianghong Zhou},
    year = {2020},
    note = {R package version 0.9.1-9000},
    url = {https://github.com/HenrikBengtsson/TopDom},
  }