Takes sample information in the form of the fraction of mutations in each of 96 trinucleotide contexts and identifies the weighted combination of published signatures that, when summed, most closely reconstructs the mutational profile.
| Version: | 1.8.0 |
| Imports: | reshape2, BSgenome, BSgenome.Hsapiens.UCSC.hg19, GenomeInfoDb, grDevices, graphics, utils |
| Suggests: | VariantAnnotation |
| Published: | 2016-07-29 |
| Author: | Rachel Rosenthal |
| Maintainer: | Rachel Rosenthal <rachel.rosenthal.14 at ucl.ac.uk> |
| BugReports: | https://github.com/raerose01/deconstructSigs/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/raerose01/deconstructSigs |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | deconstructSigs results |
| Reference manual: | deconstructSigs.pdf |
| Package source: | deconstructSigs_1.8.0.tar.gz |
| Windows binaries: | r-devel: deconstructSigs_1.8.0.zip, r-release: deconstructSigs_1.8.0.zip, r-oldrel: deconstructSigs_1.8.0.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): deconstructSigs_1.8.0.tgz, r-release (x86_64): not available, r-oldrel (x86_64): deconstructSigs_1.8.0.tgz |
| Old sources: | deconstructSigs archive |
| Reverse imports: | musicatk |
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