Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.
| Version: | 1.16.0 |
| Depends: | R (≥ 3.0.0) |
| Imports: | utils, stats, datasets, magrittr (≥ 1.0.1), ggplot2, viridis |
| Suggests: | knitr, rmarkdown, testthat, seriation, colorspace, ape, microbenchmark, gplots, heatmaply, dynamicTreeCut, pvclust, corrplot, DendSer, MASS, cluster, fpc, circlize (≥ 0.2.5), covr |
| Enhances: | ggdendro, dendroextras, Hmisc, data.table, rpart, WGCNA, moduleColor, distory, phangorn, zoo |
| Published: | 2022-07-04 |
| Author: | Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Yoav Benjamini [ths], Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), John Ma [ctb] (https://github.com/JohnMCMa), Krzysiek G [ctb] (https://github.com/storaged), Manuela Hummel [ctb] (https://github.com/hummelma), Chase Clark [ctb] (https://github.com/chasemc), Lucas Graybuck [ctb] (https://github.com/hypercompetent), jdetribol [ctb] (https://github.com/jdetribol), Ben Ho [ctb] (https://github.com/SplitInf), Samuel Perreault [ctb] (https://github.com/samperochkin), Christian Hennig [ctb] (http://www.homepages.ucl.ac.uk/~ucakche/), David Bradley [ctb] (https://github.com/DBradley27), Houyun Huang [ctb] (https://github.com/houyunhuang), Patrick Schupp [ctb] (https://github.com/pschupp) |
| Maintainer: | Tal Galili <tal.galili at gmail.com> |
| BugReports: | https://github.com/talgalili/dendextend/issues |
| License: | GPL-2 | GPL-3 |
| URL: | http://talgalili.github.io/dendextend/, https://github.com/talgalili/dendextend/, https://cran.r-project.org/package=dendextend, https://www.r-statistics.com/tag/dendextend/, https://academic.oup.com/bioinformatics/article/31/22/3718/240978/dendextend-an-R-package-for-visualizing-adjusting |
| NeedsCompilation: | no |
| Citation: | dendextend citation info |
| Materials: | README NEWS ChangeLog |
| In views: | Cluster |
| CRAN checks: | dendextend results |
| Package source: | dendextend_1.16.0.tar.gz |
| Windows binaries: | r-devel: dendextend_1.16.0.zip, r-release: dendextend_1.16.0.zip, r-oldrel: dendextend_1.16.0.zip |
| macOS binaries: | r-release (arm64): dendextend_1.16.0.tgz, r-oldrel (arm64): dendextend_1.16.0.tgz, r-release (x86_64): dendextend_1.16.0.tgz, r-oldrel (x86_64): dendextend_1.16.0.tgz |
| Old sources: | dendextend archive |
| Reverse depends: | EnsCat, PdPDB, uclust |
| Reverse imports: | BasketballAnalyzeR, BiBitR, CALANGO, CellTrails, ChAMP, CHETAH, CINNA, Cluster.OBeu, conos, consensusDE, elaborator, factoextra, FlexDotPlot, GeneTonic, GlobalAncova, GOpro, GSEAmining, heatmaply, hfr, HGC, ILoReg, InterCellar, ldaPrototype, mappoly, Mercator, metaprotr, mFD, Momocs, multiClust, OmicInt, onemap, pagoo, PhosR, pRoloc, rabhit, rainette, rSAFE, tidyHeatmap, tsibbletalk, ViSEAGO, visxhclust, YAPSA |
| Reverse suggests: | AntMAN, celltrackR, circlize, ClustAssess, cola, ComplexHeatmap, COTAN, DAPAR, DatabionicSwarm, dbscan, FCPS, HMP16SData, iconr, IncDTW, isocat, kmer, MAGeCKFlute, mdendro, packFinder, perfectphyloR, pergola, phylogram, plotly, ProjectionBasedClustering, protti, rare, sarp.snowprofile.alignment, scGPS, seriation, sharpshootR, sits, spiralize, TreeAndLeaf, variancePartition |
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