MCR_table. The coordinates were
converted to hg19 (from hg18)caret::predict.train explicitcreate_SCNA_score_df() where the SCNA
score was not calculated because the column name for
“MCR_overlap_percent” was incorrectly assigned as
“transcript_overlap_percent”TCGA_MTL_fit and
specific_thresholds after fixing the issue abovena.string argument to
create_noncoding_impact_score_df(),
predict_coding_impact() and
create_features_df() as the string that was used to
indicate when a score is not available during annotation with ANNOVAR
(default = “.”)determine_hotspot_genes() to able to use
occurrence annotations from different versions of COSMICInitial release