step() R version of JAGS function.ilog().inv_logit().inv_odds() and odds()<-.odds_ratio2() and log_odds_ratio2().proportional_change(),
proportional_difference().ran_pois_zi(), log_lik_pois_zi(),
res_pois_zi() and dev_pois_zi().pzeros() to calculate proportion of zeros in a numeric
object.res_xx() functions now return data (actual or
simulated) if type = 'data'.ran_xx() (random samples)log_lik_xx() (log-likelihood)dev_xx() (deviances)res_xx() (residuals)for the following distributions - _bern, (Bernoulli), -
_binom (binomial) - _pois (Poisson) -
_norm (normal) - _lnorm (log-normal) -
_gamma (gamma) - _gamma_pois
(gamma-Poisson)
odds(), odd_ratio() and
log_odds_ratio() to calculate odds, odds ratio and log odds
ratio.xtr_mean(),
xtr_sd(), variance(), skewness()
and kurtosis().xtr_median() to calculate the median.invlogit() to calculate the inverse logistic
transform.fabs() to calculate the absolute value of x. Used
in TMB as replacement for abs().zeros() function to sum number of 0 values in a
numeric (or MCMC object).threshold = 0 argument to pvalue()
and svalue().na_rm = FALSE argument to lower(),
upper(), pvalue(), svalue() and
zscore().as_list_unnamed() for
as_list().pextreme() and
sextreme().chk_indices() and vld_indices() to
check (validate) if an object is a list of indices ie a vector of one or
more positive integer values.par_pattern() to provide string of regular
expression for a parameter name.as_list_unnamed() generic which by default strips
all attributes except names.chk_pars() and vld_pars() to
permit missing values and duplicates.