genio: Genetics Input/Output Functions
Implements readers and writers for file formats associated with genetics data. Reading and writing Plink BED/BIM/FAM and GCTA binary GRM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles Plink and Eigenstrat tables (FAM, BIM, IND, and SNP files). There are also make functions for FAM and BIM tables with default values to go with simulated genotype data.
| Version: | 1.1.1 |
| Imports: | readr (≥ 2.0.0), tibble, dplyr, Rcpp |
| LinkingTo: | Rcpp |
| Suggests: | testthat, knitr, rmarkdown, BEDMatrix, snpStats, lobstr |
| Published: | 2022-04-27 |
| Author: | Alejandro Ochoa 
[aut, cre] |
| Maintainer: | Alejandro Ochoa <alejandro.ochoa at duke.edu> |
| BugReports: | https://github.com/OchoaLab/genio/issues |
| License: | GPL-3 |
| URL: | https://github.com/OchoaLab/genio |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | genio results |
Documentation:
| Reference manual: | genio.pdf |
| Vignettes: |
Read and write BED files with 'genio' |
Downloads:
| Package source: | genio_1.1.1.tar.gz |
| Windows binaries: | r-devel: genio_1.1.1.zip, r-release: genio_1.1.1.zip, r-oldrel: genio_1.1.1.zip |
| macOS binaries: | r-release (arm64): genio_1.1.1.tgz, r-oldrel (arm64): genio_1.1.1.tgz, r-release (x86_64): genio_1.1.1.tgz, r-oldrel (x86_64): genio_1.1.1.tgz |
| Old sources: | genio archive |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=genio to link to this page.