ggcoverage: Visualize Genome Coverage with Various Annotations
The goal of 'ggcoverage' is to simplify the process of visualizing genome coverage. It contains functions to
load data from BAM, BigWig or BedGraph files, create genome coverage plot, add various annotations to
the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation and peak annotation.
| Version: |
0.7.1 |
| Imports: |
dplyr, GenomicRanges, ggbio, ggh4x, ggplot2, ggrepel, grDevices, IRanges, magrittr, patchwork, RColorBrewer, rlang, Rsamtools, rtracklayer, scales, stats, utils, methods, GenomeInfoDb, S4Vectors, Biostrings, BSgenome, GenomicAlignments, reshape2, seqinr |
| Suggests: |
rmarkdown, knitr, BiocStyle, htmltools, BSgenome.Hsapiens.UCSC.hg19, graphics |
| Published: |
2022-09-06 |
| Author: |
Yabing Song [aut, cre] |
| Maintainer: |
Yabing Song <songyb0519 at gmail.com> |
| License: |
MIT + file LICENSE |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
ggcoverage results |
Documentation:
Downloads:
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