gkmSVM: Gapped-Kmer Support Vector Machine
Imports the 'gkmSVM' v2.0 functionalities into R <http://www.beerlab.org/gkmsvm/>
It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms.
Users should note that the suggested packages 'rtracklayer', 'GenomicRanges', 'BSgenome', 'BiocGenerics',
'Biostrings', 'GenomeInfoDb', 'IRanges', and 'S4Vectors' are all BioConductor packages <https://bioconductor.org>.
| Version: |
0.81.0 |
| Imports: |
kernlab, seqinr, utils, ROCR, Rcpp, grDevices, graphics, stats |
| LinkingTo: |
Rcpp |
| Suggests: |
rtracklayer, GenomicRanges, BSgenome, BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors |
| Published: |
2020-09-01 |
| Author: |
Mahmoud Ghandi |
| Maintainer: |
Mike Beer <mbeer at jhu.edu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
yes |
| SystemRequirements: |
C++11 |
| CRAN checks: |
gkmSVM results |
Documentation:
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