hierfstat: Estimation and Tests of Hierarchical F-Statistics
Estimates hierarchical F-statistics from haploid or
diploid genetic data with any numbers of levels in the hierarchy, following the
algorithm of Yang (Evolution(1998), 52:950).
Tests via randomisations the significance
of each F and variance components, using the likelihood-ratio statistics G
(Goudet et al. (1996) <https://academic.oup.com/genetics/article/144/4/1933/6017091>).
Estimates genetic diversity statistics
for haploid and diploid genetic datasets in various formats, including inbreeding and
coancestry coefficients, and population specific F-statistics following
Weir and Goudet (2017) <https://academic.oup.com/genetics/article/206/4/2085/6072590>.
| Version: |
0.5-11 |
| Depends: |
R (≥ 2.10) |
| Imports: |
ade4, adegenet, gaston, gtools, methods |
| Suggests: |
ape, pegas, knitr, rmarkdown, testthat |
| Published: |
2022-05-05 |
| Author: |
Jerome Goudet [aut, cre],
Thibaut Jombart [aut],
Zhian N. Kamvar [ctb],
Eric Archer [ctb],
Olivier Hardy [ctb] |
| Maintainer: |
Jerome Goudet <jerome.goudet at unil.ch> |
| BugReports: |
https://github.com/jgx65/hierfstat/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
https://www.r-project.org, https://github.com/jgx65/hierfstat |
| NeedsCompilation: |
no |
| CRAN checks: |
hierfstat results |
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