hwep 2.0.0
- Added
rmbayes()
and associated functions for Bayes
tests for random mating.
- Multiple restarts in EM algorithm for
rmlike()
to fix
issues with local convergence.
- Added
rmbayesgl()
for Bayes test of random mating when
using genotype likelihoods to account for genotype uncertainty. This
uses the {rstan}
package as a backend.
- Added
glsim()
for genotype likelihood simulation.
qqpvalue()
will now allow the user to return a ggplot
object.
- Added
menbayesgl()
for testing Mendelian segregation
frequencies from S1 and F1 populations.
hwep 0.0.2
- New function,
qqpvalue()
: A QQ-plot function for \(p\)-values on the \(-\log_{10}\)-scale.
- New function,
ts_bands()
: Calculates simultaneous
confidence bands for uniform quantiles.
- New function,
f1dr()
: Estimates the double reduction
rate from an F1 population via maximum likelihood.
- Edit aggregation strategy so that it works a little better to
mitigate the effects of the asymptotic approximation.
hwep 0.0.1