insane: INsulin Secretion ANalysEr
A user-friendly interface, using Shiny, to analyse glucose-stimulated insulin secretion (GSIS) assays in pancreatic beta cells or islets. The package allows the user to import several sets of experiments from different spreadsheets and to perform subsequent steps: summarise in a tidy format, visualise data quality and compare experimental conditions without omitting to account for technical confounders such as the date of the experiment or the technician. Together, insane is a comprehensive method that optimises pre-processing and analyses of GSIS experiments in a friendly-user interface. The Shiny App was initially designed for EndoC-betaH1 cell line following method described in Ndiaye et al., 2017 (<doi:10.1016/j.molmet.2017.03.011>).
| Version: | 0.1.0 |
| Depends: | R (≥ 3.6.0) |
| Imports: | stats, utils, broom (≥ 0.5.6), dplyr (≥ 1.0.0), DT (≥ 0.13), ggbeeswarm (≥ 0.6.0), ggplot2 (≥ 3.3.2), ggpubr (≥ 0.3.0), ggthemes (≥ 4.2.0), glue (≥ 1.4.1), patchwork (≥ 1.0.1), purrr (≥ 0.3.4), readxl (≥ 1.3.1), shiny (≥ 1.5.0), tidyr (≥ 1.1.0) |
| Suggests: | covr (≥ 3.5.0), roxygen2 (≥ 7.1.0), knitr (≥ 1.29), testthat (≥ 2.3.2), rmarkdown (≥ 2.3) |
| Published: | 2020-11-04 |
| Author: | Mickaël Canouil 
[aut, cre] |
| Maintainer: | Mickaël Canouil <mickael.canouil at cnrs.fr> |
| BugReports: | https://github.com/mcanouil/insane/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/mcanouil/insane, https://mcanouil.github.io/insane/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | insane results |
Documentation:
| Reference manual: | insane.pdf |
| Vignettes: |
insane: INsulin Secretion ANalysEr insane: Experimental Protocol |
Downloads:
| Package source: | insane_0.1.0.tar.gz |
| Windows binaries: | r-devel: insane_0.1.0.zip, r-release: insane_0.1.0.zip, r-oldrel: insane_0.1.0.zip |
| macOS binaries: | r-release (arm64): insane_0.1.0.tgz, r-oldrel (arm64): insane_0.1.0.tgz, r-release (x86_64): insane_0.1.0.tgz, r-oldrel (x86_64): insane_0.1.0.tgz |
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