pafr: Read, Manipulate and Visualize 'Pairwise mApping Format' Data

Provides functions to read, process and visualize pairwise sequence alignments in the 'PAF' format used by 'minimap2' and other whole-genome aligners. 'minimap2' is described by Li H. (2018) <doi:10.1093/bioinformatics/bty191>.

Version: 0.0.2
Depends: R (≥ 3.4.4), ggplot2
Imports: dplyr, tibble, stringr, rlang
Suggests: testthat, covr, knitr, ggpubr, rmarkdown, microbenchmark
Published: 2020-12-08
Author: David Winter ORCID iD [aut, cre], Kate Lee ORCID iD [ctb], Murray Cox ORCID iD [ctb]
Maintainer: David Winter <david.winter at gmail.com>
BugReports: https://github.com/dwinter/pafr/issues
License: MIT + file LICENSE
URL: https://dwinter.github.io/pafr/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: pafr results

Documentation:

Reference manual: pafr.pdf
Vignettes: pafr_tutorial

Downloads:

Package source: pafr_0.0.2.tar.gz
Windows binaries: r-devel: pafr_0.0.2.zip, r-release: pafr_0.0.2.zip, r-oldrel: pafr_0.0.2.zip
macOS binaries: r-release (arm64): pafr_0.0.2.tgz, r-oldrel (arm64): pafr_0.0.2.tgz, r-release (x86_64): pafr_0.0.2.tgz, r-oldrel (x86_64): pafr_0.0.2.tgz

Linking:

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