Run R CMD check from R and Capture Results
Run R CMD check form R programatically, and capture the results of the individual checks.
Call rcmdcheck() on a source R package .tar.gz file, or on a folder containing your R package. Supply quiet = FALSE if you want to omit the output. The result of the check is returned, in a list with elements errors, warnings, and notes. Each element is a character vector, and one element of the character vectors is a single failure.
rcmdcheck() returns an rcmdcheck object, which you can query and manipulate.
library(rcmdcheck)
chk <- rcmdcheck("tests/testthat/bad1", quiet = TRUE)
chk
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────── badpackage 1.0.0 ────
#> Duration: 12.4s
#>
#> ❯ checking DESCRIPTION meta-information ... WARNING
#> Non-standard license specification:
#> Public domain
#> Standardizable: FALSE
#>
#> 0 errors ✔ | 1 warning ✖ | 0 notes ✔check_details() turns the check results into a simple lists with the following information currently:
names(check_details(chk))
#> [1] "package" "version" "notes" "warnings" "errors"
#> [6] "platform" "checkdir" "install_out" "description" "session_info"
#> [11] "cran" "bioc"package: Package name.version: Package version number.notes: Character vector of check NOTEs.warnings: Character vector of check WARNINGs.errors: Character vector of check ERRORs.platform: Platform, e.g. x86_64-apple-darwin15.6.0.checkdir: Check directory.install_out: Output of the package installation.description: The text of the DESCRIPTION file.session_info: A sessioninfo::session_info object, session information from within the check process.cran: Flag, whether this is a CRAN package. (Based on the Repository field in DESCRIPTION, which is typically only set for published CRAN packages.)bioc: Flag, whether this is a Bioconductor package, based on the presence of the biocViews field in DESCRIPTION.Note that if the check results were parsed from a file, some of these fields might be missing (NULL), as we don’t have access to the original DESCRIPTION, the installation output, etc.
parse_check() parses check output from a file, parse_check_url() parses check output from a URL.
rcmdcheck has a functions to access CRAN’s package check results.
cran_check_flavours() downloads the names of the CRAN platforms:
cran_check_flavours()
#> [1] "r-devel-linux-x86_64-debian-clang" "r-devel-linux-x86_64-debian-gcc"
#> [3] "r-devel-linux-x86_64-fedora-clang" "r-devel-linux-x86_64-fedora-gcc"
#> [5] "r-devel-windows-x86_64" "r-patched-linux-x86_64"
#> [7] "r-patched-solaris-x86" "r-release-linux-x86_64"
#> [9] "r-release-macos-arm64" "r-release-macos-x86_64"
#> [11] "r-release-windows-ix86+x86_64" "r-oldrel-macos-x86_64"
#> [13] "r-oldrel-windows-ix86+x86_64"cran_check_results() loads and parses all check results for a package.
cran_check_results("igraph")
#> $`r-devel-linux-x86_64-debian-clang`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking top-level files ... WARNING
#> Output from running autoreconf:
#> configure.ac:71: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:71: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:71: the top level
#> configure.ac:110: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:110: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:110: the top level
#> configure.ac:127: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:127: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:127: the top level
#>
#> 0 errors ✔ | 1 warning ✖ | 0 notes ✔
#>
#> $`r-devel-linux-x86_64-debian-gcc`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking top-level files ... WARNING
#> Output from running autoreconf:
#> configure.ac:71: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:71: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:71: the top level
#> configure.ac:110: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:110: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:110: the top level
#> configure.ac:127: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:127: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:127: the top level
#>
#> 0 errors ✔ | 1 warning ✖ | 0 notes ✔
#>
#> $`r-devel-linux-x86_64-fedora-clang`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking installed package size ... NOTE
#> installed size is 16.9Mb
#> sub-directories of 1Mb or more:
#> R 1.4Mb
#> help 1.1Mb
#> libs 14.0Mb
#>
#> 0 errors ✔ | 0 warnings ✔ | 1 note ✖
#>
#> $`r-devel-linux-x86_64-fedora-gcc`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> 0 errors ✔ | 0 warnings ✔ | 0 notes ✔
#>
#> $`r-devel-windows-x86_64`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking installed package size ... NOTE
#> installed size is 9.8Mb
#> sub-directories of 1Mb or more:
#> R 1.4Mb
#> help 1.1Mb
#> libs 6.9Mb
#>
#> 0 errors ✔ | 0 warnings ✔ | 1 note ✖
#>
#> $`r-devel-windows-x86_64-gcc10-UCRT`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking whether package 'igraph' can be installed ... ERROR
#> See below...
#>
#> ❯ checking package dependencies ... NOTE
#> Package suggested but not available for checking: 'rgl'
#>
#> ── Install failure ───────────────────────────────────────────────────────────────────────────────────────────────────────
#>
#> <00install.out file does not exist>
#> 1 error ✖ | 0 warnings ✔ | 1 note ✖
#>
#> $`r-patched-linux-x86_64`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking top-level files ... WARNING
#> Output from running autoreconf:
#> configure.ac:71: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:71: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:71: the top level
#> configure.ac:110: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:110: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:110: the top level
#> configure.ac:127: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:127: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:127: the top level
#>
#> 0 errors ✔ | 1 warning ✖ | 0 notes ✔
#>
#> $`r-patched-solaris-x86`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking installed package size ... NOTE
#> installed size is 9.6Mb
#> sub-directories of 1Mb or more:
#> R 1.5Mb
#> help 1.2Mb
#> libs 6.5Mb
#>
#> 0 errors ✔ | 0 warnings ✔ | 1 note ✖
#>
#> $`r-release-linux-x86_64`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking top-level files ... WARNING
#> Output from running autoreconf:
#> configure.ac:71: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:71: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:71: the top level
#> configure.ac:110: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:110: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:110: the top level
#> configure.ac:127: warning: The macro `AC_HELP_STRING' is obsolete.
#> configure.ac:127: You should run autoupdate.
#> ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
#> configure.ac:127: the top level
#>
#> 0 errors ✔ | 1 warning ✖ | 0 notes ✔
#>
#> $`r-release-macos-arm64`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking installed package size ... NOTE
#> installed size is 23.7Mb
#> sub-directories of 1Mb or more:
#> R 2.0Mb
#> help 1.1Mb
#> libs 20.0Mb
#>
#> 0 errors ✔ | 0 warnings ✔ | 1 note ✖
#>
#> $`r-release-macos-x86_64`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking installed package size ... NOTE
#> installed size is 21.2Mb
#> sub-directories of 1Mb or more:
#> R 1.4Mb
#> help 1.1Mb
#> libs 18.3Mb
#>
#> 0 errors ✔ | 0 warnings ✔ | 1 note ✖
#>
#> $`r-release-windows-ix86+x86_64`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking installed package size ... NOTE
#> installed size is 17.1Mb
#> sub-directories of 1Mb or more:
#> R 1.4Mb
#> help 1.1Mb
#> libs 14.2Mb
#>
#> 0 errors ✔ | 0 warnings ✔ | 1 note ✖
#>
#> $`r-oldrel-macos-x86_64`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking installed package size ... NOTE
#> installed size is 21.2Mb
#> sub-directories of 1Mb or more:
#> R 1.4Mb
#> help 1.1Mb
#> libs 18.3Mb
#>
#> 0 errors ✔ | 0 warnings ✔ | 1 note ✖
#>
#> $`r-oldrel-windows-ix86+x86_64`
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────────────── igraph 1.2.6 ────
#> Duration: 0ms
#>
#> ❯ checking installed package size ... NOTE
#> installed size is 17.1Mb
#> sub-directories of 1Mb or more:
#> R 1.4Mb
#> help 1.1Mb
#> libs 14.2Mb
#>
#> 0 errors ✔ | 0 warnings ✔ | 1 note ✖
#>
#> attr(,"package")
#> [1] "igraph"
#> attr(,"class")
#> [1] "rmcdcheck_cran_results"compare_checks() can compare two or more rcmdcheck objects. compare_to_cran() compares an rcmdcheck object to the CRAN checks of the same package:
chk <- rcmdcheck(quiet = TRUE)
compare_to_cran(chk)
#> ── R CMD check comparison ────────────────────────────────────────────────────────────── rcmdcheck 1.3.3 / 1.3.3.9000 ────
#> Status: OK
#>
#> ── Fixed
#>
#> ✔ checking LazyData ... NOTE
#> ✔ checking LazyData ... NOTE
#> ✔ checking LazyData ... NOTE
#> ✔ checking LazyData ... NOTE
#> ✔ checking LazyData ... NOTE
#> ✔ checking LazyData ... NOTErcmdcheck_process is a processx::process class, that can run R CMD check in the background. You can also use this to run multiple checks concurrently. processx::process methods can be used to poll or manipulate the check processes.
chkpx$wait()
chkpx$parse_results()
#> ── R CMD check results ───────────────────────────────────────────────────────────────────────── rcmdcheck 1.3.3.9000 ────
#> Duration: 23.6s
#>
#> 0 errors ✔ | 0 warnings ✔ | 0 notes ✔MIT © Mango Solutions, Gábor Csárdi, RStudio