Introduction

The original R-GRASS interface (Bivand 2000; Neteler and Mitasova 2008) was written mainly to permit R objects represented as sp class objects to be moved to GRASS, and GRASS objects to be moved to R for statistical analysis. From spgrass6 0.6-3 (April 2009) following a fruitful workshop at Queen’s University, Belfast, the interface was re-written to use the --interface-description flag provided for each GRASS command, also used by the Python interface to GRASS commands. Command interface descriptions are parsed from XML and cached as R objects for efficiency. The current version of the R-GRASS interface is contained in this package, rgrass. In addition, an R function initGRASS() was written to permit GRASS to be started from within GRASS to which we will return below.

Starting R inside GRASS

When starting GRASS GIS from a terminal console (here GRASS 8.2.0), one can continue in the GRASS terminal console, starting an interactive R session from there (here R 4.2.1). Loading and attaching the R-GRASS interface package rgrass in the R session, we see that the current GRASS location is detected and reported:

$ /home/rsb/topics/grass/g820/bin/grass /home/rsb/topics/grassdata/nc_basic_spm_grass7/rsb
Starting GRASS GIS...
Cleaning up temporary files...

          __________  ___   __________    _______________
         / ____/ __ \/   | / ___/ ___/   / ____/  _/ ___/
        / / __/ /_/ / /| | \__ \\_  \   / / __ / / \__ \
       / /_/ / _, _/ ___ |___/ /__/ /  / /_/ // / ___/ /
       \____/_/ |_/_/  |_/____/____/   \____/___//____/

Welcome to GRASS GIS 8.2.0
GRASS GIS homepage:                      https://grass.osgeo.org
This version running through:            Bash Shell (/bin/bash)
Help is available with the command:      g.manual -i
See the licence terms with:              g.version -c
See citation options with:               g.version -x
If required, restart the GUI with:       g.gui wxpython
When ready to quit enter:                exit

Launching <wxpython> GUI in the background, please wait...
GRASS nc_basic_spm_grass7/rsb:github-rsb > R

R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

...

> library(rgrass)
Loading required package: XML
GRASS GIS interface loaded with GRASS version: GRASS 8.2.0 (2022)
and location: nc_basic_spm_grass7

Since rgrass knows the current location, we can for example use execGRASS() to list GRASS rasters in the PERMANENT mapset in the standard North Carolina basic data set (https://grass.osgeo.org/sampledata/north_carolina/nc_basic_spm_grass7.zip):

> execGRASS("g.list", type="raster", mapset="PERMANENT")
basins
elevation
elevation_shade
geology
lakes
landuse
soils
> q()
Save workspace image? [y/n/c]: n
GRASS nc_basic_spm_grass7/rsb:github-rsb > exit
Cleaning up default sqlite database ...
Cleaning up temporary files...
Done.

Goodbye from GRASS GIS

Leaving R returns us to the GRASS terminal console, which we can also exit.

R can also be started within the GRASS GUI, by choosing the console tab, and entering for example rstudio, or another R graphical user interface on Windows or macOS. This screendump shows the same listing of rasters in PERMANENT in rstudio:

Starting GRASS inside R

From spgrass6 0.6-3, it has also been possible to start a GRASS session from a running R session using the initGRASS() function. This is done by setting GRASS and environment variables from the R session (https://grass.osgeo.org/grass80/manuals/variables.html). Starting GRASS from R may use a temporary location, or may use an existing GRASS LOCATION.

Temporary GRASS location

It may be useful to set an environmental variable to the value of GISBASE, as shown for example in the GRASS terminal console:

GRASS nc_basic_spm_grass7/rsb:github-rsb > echo $GISBASE
/home/rsb/topics/grass/g820/grass82

Starting R with such a suitable environment variable set lets us retrieve it later when needed. When loaded and attached, rgrass reports that it seems that GRASS is not running:

$ GRASS_INSTALLATION=/home/rsb/topics/grass/g820/grass82 R

R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

...

> library(rgrass)
Loading required package: XML
GRASS GIS interface loaded with GRASS version: (GRASS not running)

Here we’ll use a raster file provided with terra:

> library(terra)
terra 1.6.0
> f <- system.file("ex/elev.tif", package="terra")
> r <- rast(f)

The first argument to initGRASS() is gisBase=, which here we are passing the value of the environmental variable after checking that it is a directory. The second argument is where to write the GISRC file. The third is a template raster (here a "SpatRaster" object) from which to clone the temporary location size, position, resolution and projection:

> GRASS_INSTALLATION <- Sys.getenv("GRASS_INSTALLATION")
> file.info(GRASS_INSTALLATION)$isdir
[1] TRUE
> loc <- initGRASS(gisBase=GRASS_INSTALLATION, home=tempdir(), SG=r, override=TRUE)

As can be seen, initGRASS() creates not only environment and GRASS variables, but also many files in the location mapsets; g.gisenv also shows details:

> list.files(file.path(loc$GISDBASE, loc$LOCATION_NAME), recursive=TRUE)
[1] "file28aaf6dc1c44c/WIND"          "file28aaf6dc1c44c/windows/input"
[3] "PERMANENT/DEFAULT_WIND"          "PERMANENT/PROJ_EPSG"            
[5] "PERMANENT/PROJ_INFO"             "PERMANENT/PROJ_SRID"            
[7] "PERMANENT/PROJ_UNITS"            "PERMANENT/PROJ_WKT"             
[9] "PERMANENT/WIND"                 
> execGRASS("g.gisenv")
GISDBASE='/tmp/Rtmpe7QdVd';
LOCATION_NAME='file28aaf5be4b905';
MAPSET='file28aaf6dc1c44c';
GRASS_GUI='text';

We may now write R objects to the temporary GRASS location for manipulation and analysis, here calculating slope and aspect layers:

> write_RAST(r, vname="terra_elev")
Importing raster map <terra_elev>...
 100%
SpatRaster read into GRASS using r.in.gdal from file 
> execGRASS("g.list", type="raster", mapset=loc$MAPSET)
terra_elev
> execGRASS("r.slope.aspect", flags="overwrite", elevation="terra_elev", slope="slope", aspect="aspect")
 100%
Aspect raster map <aspect> complete
Slope raster map <slope> complete
> u1 <- read_RAST(c("terra_elev", "slope", "aspect"))
Checking GDAL data type and nodata value...
 100%
Using GDAL data type <UInt16>
Exporting raster data to RRASTER format...
 100%
r.out.gdal complete. File </tmp/RtmpLsAbI6/file29f4b33cd20f6.grd> created.
Checking GDAL data type and nodata value...
 100%
Using GDAL data type <Float32>
Exporting raster data to RRASTER format...
 100%
r.out.gdal complete. File </tmp/RtmpLsAbI6/file29f4b2d2e045b.grd> created.
Checking GDAL data type and nodata value...
 100%
Using GDAL data type <Float32>
Exporting raster data to RRASTER format...
 100%
r.out.gdal complete. File </tmp/RtmpLsAbI6/file29f4b52cab445.grd> created.
> u1
class       : SpatRaster 
dimensions  : 90, 95, 3  (nrow, ncol, nlyr)
resolution  : 0.008333326, 0.008333333  (x, y)
extent      : 5.741667, 6.533333, 49.44167, 50.19167  (xmin, xmax, ymin, ymax)
coord. ref. : lon/lat WGS 84 (EPSG:4326) 
sources     : file29f4b33cd20f6.grd  
              file29f4b2d2e045b.grd  
              file29f4b52cab445.grd  
names       :   terra_elev,        slope,       aspect 
min values  : 141.00000000,   0.01416342,   0.08974174 
max values  :   547.000000,     7.229438,   360.000000

Existing GRASS location

Similarly, GRASS may be started in an R session by providing the gisDbase=, “location= and mapset= arguments with valid values:

$ GRASS_INSTALLATION=/home/rsb/topics/grass/g820/grass82 R

R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

...

> library(rgrass)
Loading required package: XML
GRASS GIS interface loaded with GRASS version: (GRASS not running)
> GRASS_INSTALLATION <- Sys.getenv("GRASS_INSTALLATION")
> loc <- initGRASS(GRASS_INSTALLATION, home=tempdir(), gisDbase="/home/rsb/topics/grassdata", location="nc_basic_spm_grass7", mapset="rsb", override=TRUE)
> execGRASS("g.gisenv")
GISDBASE='/home/rsb/topics/grassdata';
LOCATION_NAME='nc_basic_spm_grass7';
MAPSET='rsb';
GRASS_GUI='text';
> execGRASS("g.list", type="raster", mapset="PERMANENT")
basins
elevation
elevation_shade
geology
lakes
landuse
soils

References

Bivand, R. S. 2000. “Using the R Statistical Data Analysis Language on GRASS 5.0 GIS Data Base Files.” Computers and Geosciences 26: 1043–52.
Neteler, M., and H. Mitasova. 2008. Open Source GIS: A GRASS GIS Approach, Third Edition. New York: Springer.