Introduction to stminsights

Preparation

The main part of stminsights is an interactive shiny application, which requires a .RData file as input. This file should include:

• one or several stm objects.
• one or several estimateEffect objects.
• an object out which was used to fit your stm models and contains documents, vocabulary and metadata.

As an example, the following code uses the quanteda package to prepare the gadarian corpus for structural topic modeling. Afterwards, two models and estimates effects are computed and all objects required for stminsights are stored in stm_gadarian.RData:

library(stm)
library(quanteda)

# prepare data
data <- corpus(gadarian, text_field = 'open.ended.response')
docvars(data)$text <- as.character(data)
data <- dfm(data, stem = TRUE, remove = stopwords('english'),
           remove_punct = TRUE) %>% dfm_trim(min_count = 2)
out <- convert(data, to = 'stm')

# fit models and effect estimates
gadarian_3 <- stm(documents = out$documents,
                 vocab = out$vocab,
                 data = out$meta,
                 prevalence = ~ treatment + s(pid_rep),
                 K = 3, verbose = FALSE)
prep_3 <- estimateEffect(1:3 ~ treatment + s(pid_rep), gadarian_3,
                        meta = out$meta)
gadarian_5 <- stm(documents = out$documents,
                 vocab = out$vocab,
                 data = out$meta,
                 prevalence = ~ treatment + s(pid_rep),
                 K = 5, verbose = FALSE)
prep_5 <- estimateEffect(1:5 ~ treatment + s(pid_rep), gadarian_5,
                        meta = out$meta)

# save objects in .RData file
save.image('stm_gadarian.RData')

Interactive application

After preparing the .RData file, the shiny application can be launched with run_stminsights():

#library(stminsights)
#run_stminsights()

Hovering over UI elements displays tooltips that assist users in navigating through the application. Stminsights is organized as a dashboard with multiple columns that serve different purposes:

• Info & Topics:

  • load the .RData file, select models and as effect estimates
  • inspect the most important terms and documents for topics
  • assign labels to topics

• Proportions (corpus):

  • show proportions for each topic
  • export proportion plots

• Proportions (documents):

  • show topic proportions for each document
  • export document topic proportion plots
  • visualize and inspect document topic proportions interactively

• Plots:

  • create different visualizations for the output of the selected model
  • export effect plots

• Correlation Graph:

  • create visualizations of the correlation network between topics
  • export correlation plots

• Misc:

  • export information about the select model in spreadsheet format
  • calculate diagnostics for evaluating all models in the .RData
  • export diagnostic plots

Utility functions

Although the shiny application includes several options for exporting and visualizing the output from structural topic models, users may wish to create their own plots in different formats. For such cases stminsights offers three utility functions that can be used outside of the shiny application:

• get_effects(): create a dataframe including prevalence effects for one stm model
• get_network(): create a tidygraph for a correlation network of stm topics
• get_diag(): create a dataframe including statistical diagnostics for several models