Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) <doi:10.1371/journal.pone.0197954>.
| Version: | 1.0.4 |
| Depends: | rstan, TMB (≥ 1.7.12) |
| Imports: | methods, Rcpp |
| LinkingTo: | StanHeaders, rstan, BH, Rcpp, RcppEigen, TMB, RcppParallel |
| Published: | 2022-03-21 |
| Author: | Kasper Kristensen |
| Maintainer: | Kasper Kristensen <kaskr at dtu.dk> |
| BugReports: | https://github.com/kaskr/tmbstan/issues |
| License: | GPL (≥ 3) |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Citation: | tmbstan citation info |
| CRAN checks: | tmbstan results |
| Reference manual: | tmbstan.pdf |
| Package source: | tmbstan_1.0.4.tar.gz |
| Windows binaries: | r-devel: tmbstan_1.0.4.zip, r-release: tmbstan_1.0.4.zip, r-oldrel: tmbstan_1.0.4.zip |
| macOS binaries: | r-release (arm64): tmbstan_1.0.4.tgz, r-oldrel (arm64): tmbstan_1.0.4.tgz, r-release (x86_64): tmbstan_1.0.4.tgz, r-oldrel (x86_64): tmbstan_1.0.4.tgz |
| Old sources: | tmbstan archive |
| Reverse suggests: | SAMtool |
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