The fastest delimited reader for R, 1.23 GB/sec.
But thatβs impossible! How can it be so fast?
vroom doesnβt stop to actually read all of your data, it simply indexes where each record is located so it can be read later. The vectors returned use the Altrep framework to lazily load the data on-demand when it is accessed, so you only pay for what you use. This lazy access is done automatically, so no changes to your R data-manipulation code are needed.
vroom also uses multiple threads for indexing, materializing non-character columns, and when writing to further improve performance.
package | version | time (sec) | speedup | throughput |
---|---|---|---|---|
vroom | 1.5.1 | 1.36 | 53.30 | 1.23 GB/sec |
data.table | 1.14.0 | 5.83 | 12.40 | 281.65 MB/sec |
readr | 1.4.0 | 37.30 | 1.94 | 44.02 MB/sec |
read.delim | 4.1.0 | 72.31 | 1.00 | 22.71 MB/sec |
vroom has nearly all of the parsing features of readr for delimited and fixed width files, including
dplyr::select()
** these are additional features not in readr.
** requires num_threads = 1
.
Install vroom from CRAN with:
Alternatively, if you need the development version from GitHub install it with:
See getting started to jump start your use of vroom!
vroom uses the same interface as readr to specify column types.
vroom::vroom("mtcars.tsv",
col_types = list(cyl = "i", gear = "f",hp = "i", disp = "_",
drat = "_", vs = "l", am = "l", carb = "i")
)
#> # A tibble: 32 Γ 10
#> model mpg cyl hp wt qsec vs am gear carb
#> <chr> <dbl> <int> <int> <dbl> <dbl> <lgl> <lgl> <fct> <int>
#> 1 Mazda RX4 21 6 110 2.62 16.5 FALSE TRUE 4 4
#> 2 Mazda RX4 Wag 21 6 110 2.88 17.0 FALSE TRUE 4 4
#> 3 Datsun 710 22.8 4 93 2.32 18.6 TRUE TRUE 4 1
#> # β¦ with 29 more rows
vroom natively supports reading from multiple files (or even multiple connections!).
First we generate some files to read by splitting the nycflights dataset by airline.
library(nycflights13)
purrr::iwalk(
split(flights, flights$carrier),
~ { .x$carrier[[1]]; vroom::vroom_write(.x, glue::glue("flights_{.y}.tsv"), delim = "\t") }
)
Then we can efficiently read them into one tibble by passing the filenames directly to vroom.
files <- fs::dir_ls(glob = "flights*tsv")
files
#> flights_9E.tsv flights_AA.tsv flights_AS.tsv flights_B6.tsv flights_DL.tsv
#> flights_EV.tsv flights_F9.tsv flights_FL.tsv flights_HA.tsv flights_MQ.tsv
#> flights_OO.tsv flights_UA.tsv flights_US.tsv flights_VX.tsv flights_WN.tsv
#> flights_YV.tsv
vroom::vroom(files)
#> Rows: 336776 Columns: 19
#> ββ Column specification ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
#> Delimiter: "\t"
#> chr (4): carrier, tailnum, origin, dest
#> dbl (14): year, month, day, dep_time, sched_dep_time, dep_delay, arr_time, ...
#> dttm (1): time_hour
#>
#> βΉ Use `spec()` to retrieve the full column specification for this data.
#> βΉ Specify the column types or set `show_col_types = FALSE` to quiet this message.
#> # A tibble: 336,776 Γ 19
#> year month day dep_time sched_dep_time dep_delay arr_time sched_arr_time
#> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
#> 1 2013 1 1 810 810 0 1048 1037
#> 2 2013 1 1 1451 1500 -9 1634 1636
#> 3 2013 1 1 1452 1455 -3 1637 1639
#> # β¦ with 336,773 more rows, and 11 more variables: arr_delay <dbl>,
#> # carrier <chr>, flight <dbl>, tailnum <chr>, origin <chr>, dest <chr>,
#> # air_time <dbl>, distance <dbl>, hour <dbl>, minute <dbl>, time_hour <dttm>
The speed quoted above is from a real 1.53G dataset with 14,388,451 rows and 11 columns, see the benchmark article for full details of the dataset and bench/ for the code used to retrieve the data and perform the benchmarks.
In addition to the arguments to the vroom()
function, you can control the behavior of vroom with a few environment variables. Generally these will not need to be set by most users.
VROOM_TEMP_PATH
- Path to the directory used to store temporary files when reading from a R connection. If unset defaults to the R sessionβs temporary directory (tempdir()
).VROOM_THREADS
- The number of processor threads to use when indexing and parsing. If unset defaults to parallel::detectCores()
.VROOM_SHOW_PROGRESS
- Whether to show the progress bar when indexing. Regardless of this setting the progress bar is disabled in non-interactive settings, R notebooks, when running tests with testthat and when knitting documents.VROOM_CONNECTION_SIZE
- The size (in bytes) of the connection buffer when reading from connections (default is 128 KiB).VROOM_WRITE_BUFFER_LINES
- The number of lines to use for each buffer when writing files (default: 1000).There are also a family of variables to control use of the Altrep framework. For versions of R where the Altrep framework is unavailable (R < 3.5.0) they are automatically turned off and the variables have no effect. The variables can take one of true
, false
, TRUE
, FALSE
, 1
, or 0
.
VROOM_USE_ALTREP_NUMERICS
- If set use Altrep for all numeric types (default false
).There are also individual variables for each type. Currently only VROOM_USE_ALTREP_CHR
defaults to true
.
VROOM_USE_ALTREP_CHR
VROOM_USE_ALTREP_FCT
VROOM_USE_ALTREP_INT
VROOM_USE_ALTREP_BIG_INT
VROOM_USE_ALTREP_DBL
VROOM_USE_ALTREP_NUM
VROOM_USE_ALTREP_LGL
VROOM_USE_ALTREP_DTTM
VROOM_USE_ALTREP_DATE
VROOM_USE_ALTREP_TIME
RStudioβs environment pane calls object.size()
when it refreshes the pane, which for Altrep objects can be extremely slow. RStudio 1.2.1335+ includes the fixes (RStudio#4210, RStudio#4292) for this issue, so it is recommended you use at least that version.
data.table::fread()
is blazing fast and great motivation to see how fast we could go faster!