PLNmodels: Poisson Lognormal Models
The Poisson-lognormal model and variants (Chiquet, Mariadassou and Robin, 2021 <doi:10.3389/fevo.2021.588292>) can be used for a variety of multivariate problems when count data are at play, including principal component analysis for count data, discriminant analysis, model-based clustering and network inference. Implements variational algorithms to fit such models accompanied with a set of functions for visualization and diagnostic.
| Version: | 0.11.7 |
| Depends: | R (≥ 3.4) |
| Imports: | methods, stats, MASS, future, future.apply, R6, glassoFast, Matrix, Rcpp, nloptr, igraph, grid, gridExtra, dplyr, tidyr, purrr, ggplot2, corrplot, magrittr, rlang |
| LinkingTo: | Rcpp, RcppArmadillo, nloptr |
| Suggests: | knitr, rmarkdown, testthat, covr, pkgdown, biomformat, phyloseq, spelling, factoextra, Wrench |
| Published: | 2022-08-25 |
| Author: | Julien Chiquet 
[aut, cre],
Mahendra Mariadassou
[aut],
Stéphane Robin [ctb],
Giovanni Poggiato [ctb],
François Gindraud [aut] |
| Maintainer: | Julien Chiquet <julien.chiquet at inrae.fr> |
| BugReports: | https://github.com/pln-team/PLNmodels/issues |
| License: | GPL (≥ 3) |
| URL: | https://pln-team.github.io/PLNmodels/ |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | PLNmodels citation info |
| Materials: | NEWS |
| CRAN checks: | PLNmodels results |
Documentation:
| Reference manual: | PLNmodels.pdf |
| Vignettes: |
import PLN PLNLDA PLNPCA PLNmixture PLNnetwork trichoptera |
Downloads:
| Package source: | PLNmodels_0.11.7.tar.gz |
| Windows binaries: | r-devel: PLNmodels_0.11.7.zip, r-release: PLNmodels_0.11.7.zip, r-oldrel: PLNmodels_0.11.7.zip |
| macOS binaries: | r-release (arm64): PLNmodels_0.11.7.tgz, r-oldrel (arm64): PLNmodels_0.11.7.tgz, r-release (x86_64): PLNmodels_0.11.7.tgz, r-oldrel (x86_64): PLNmodels_0.11.7.tgz |
| Old sources: | PLNmodels archive |
Linking:
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