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archeofrag, AurieLSHGaussian, bayesloglin, bc3net, BioNetStat, BiRewire, BNSL, bnstruct, Boptbd, brainGraph, c3net, caOmicsV, causaloptim, cccd, centiserve, cglasso, clickstream, clustAnalytics, conos, corclass, coreCT, CoRegNet, corkscrew, covEB, CytoTree, DART, dc3net, dcGOR, Diderot, DiffCorr, diffee, disparityfilter, dnet, DynComm, ebdbNet, editrules, epihet, epistasis, FamAgg, fanovaGraph, fasjem, fastclime, flare, Fletcher2013b, FlowSOM, func2vis, GADAG, gdistance, genlasso, GNAR, graphkernels, GraphPAC, GSAR, habCluster, hglasso, hipathia, HyperG, iDINGO, igraphtosonia, immcp, jeek, JGL, JointNets, LEANR, linkcomm, LncPath, locits, LPKsample, manet, massiveGST, MEGENA, MetaLandSim, micropan, MineICA, MNS, modMax, morph, mRMRe, multichull, multinet, ndexr, NEpiC, netassoc, netbiov, netboxr, NetPathMiner, NetSAM, NetSwan, netZooR, oposSOM, optbdmaeAT, optrcdmaeAT, OutrankingTools, pagoda2, PANR, parsec, Path2PPI, pcSteiner, Pi, postHoc, PoTRA, PPInfer, qtlnet, ragt2ridges, RCA, regmed, rEMM, RNetLogo, RNewsflow, robin, rsemmed, rTRM, sand, SANTA, SARP.compo, SEMgraph, sglasso, ShapePattern, shp2graph, simule, sincell, sindyr, SOMbrero, soptdmaeA, splineTimeR, SteinerNet, SubpathwayLNCE, SVN, threejs, timeordered, tnet, ts2net, VertexSort, wfg |
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adegenet, AFM, akc, alakazam, AlphaBeta, ANF, AnimalHabitatNetwork, anipaths, apisensr, arulesViz, ASpediaFI, ASpli, autoharp, babsim.hospital, BacArena, backbone, backShift, BallMapper, BASiNET, BASiNETEntropy, basket, batchelor, baycn, BayesMallows, BayesMRA, BayesNetBP, BayesSUR, bcgam, BCT, BDgraph, beam, betalink, bibliometrix, bifurcatingr, BiocPkgTools, Bioi, BioNERO, BioNet, Bios2cor, BioTIP, bipartite, bluster, bnma, bnviewer, BoolNet, bootcluster, bootnet, BPEC, BSBT, btergm, bwsTools, C443, CAMERA, cancerGI, Canek, cape, CARlasso, CARNIVAL, cartograflow, Cascade, CASCORE, cassowaryr, causact, causalDisco, causaleffect, CausalR, ccTensor, CellNOptR, CellTrails, cellTree, CEMiTool, CePa, ceRNAnetsim, CeRNASeek, CeTF, chemodiv, cholera, CHRONOS, cicero, CIDER, CIMICE, CINNA, CiteFuse, CKMRpop, clipper, cliqueMS, CliquePercolation, ClustAssess, ClusTorus, clustree, clustringr, CoDiNA, cogeqc, comato, communication, concatipede, concorR, condiments, CoNI, ConnectednessApproach, contact, Corbi, corHMM, corpustools, corTest, cosmosR, crandep, cranly, cRegulome, crimelinkage, criticalpath, CTDquerier, ctgGEM, cytometree, dcanr, DCD, dce, DCLEAR, DDPNA, deaR, debrowser, degreenet, delayed, DEsubs, dexterMST, DiagrammeR, diffcoexp, diffeRenTES, DiffNet, diffudist, diffusionMap, diffusr, diffuStats, DirectedClustering, DIscBIO, discourseGT, discretecdAlgorithm, dm, DmelSGI, dnapath, DNLC, dnr, doolkit, dragon, drake, DrDimont, DRviaSPCN, dynetNLAResistance, dynplot, dynwrap, ecoCopula, ECoL, econet, EcoNetGen, economiccomplexity, EcotoneFinder, edgebundle, edgebundleR, edmcr, EDOIF, eegc, eff2, EGAD, EGAnet, eHDPrep, einet, emba, EmbedSOM, EnMCB, enrichplot, epicontacts, EpiILMCT, epiNEM, epinetr, erah, ergmclust, esATAC, espadon, ess, EstimateGroupNetwork, etree, EventPointer, evolqg, exp2flux, fairadapt, fake, fastnet, fastRG, fbnet, FCMapper, fcoex, FedData, FELLA, FGNet, FindIt, FLAMES, flowGraph, foodingraph, ForestGapR, forestRK, fossilbrush, FrF2, fssemR, gamCopula, GAPGOM, gDefrag, gemtc, genBaRcode, GeneGeneInteR, genekitr, geneplast, GENESIS, GeneTonic, GenomicInteractions, geonet, geonetwork, ggdag, ggenealogy, ggm, ggnetwork, ggraph, gimme, gmat, GMPro, GNET2, GOCompare, GOxploreR, gpart, gRain, grainscape, GRaNIE, graph4lg, graphicalExtremes, graphicalVAR, graphlayouts, graphsim, graphTweets, gRbase, GREMLINS, gRim, gromovlab, GWENA, handwriter, hergm, HeteroGGM, highcharter, hisse, HLSM, HPiP, HTSSIP, huge, hypeR, iCARH, ICDS, iCellR, iconr, icosa, IDSpatialStats, igraphinshiny, iGraphMatch, imager, imcRtools, IMEC, IMMAN, immunarch, immuneSIM, imsig, incidentally, INDEED, influenceR, influential, inlmisc, intensitynet, InterCellar, intergraph, InterMineR, IntramiRExploreR, IRISFGM, iSEE, ITNr, IxPopDyMod, Jdmbs, jti, kangar00, KEGGlincs, keyplayer, kknn, kstMatrix, l1spectral, LACE, lconnect, leiden, leidenAlg, leidenbase, levi, lexRankr, linkprediction, Linnorm, LoopDetectR, LSVAR, lvm4net, madrat, MAGAR, malan, mAPKL, 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PAFit, pageRank, pairkat, pald, pandaR, PanelMatch, PanomiR, pareg, particles, pathfindR, Patterns, paxtoolsr, pcalg, pcFactorStan, PDATK, pencopulaCond, perturbR, PFP, PGRdup, phangorn, PhaseTypeR, phemd, PhenoGeneRanker, PhosR, phylopath, phyloregion, phyloseq, phyloseqGraphTest, phylosignal, phyloTop, piano, piecewiseSEM, pkggraph, pkgnet, pkgstats, PlackettLuce, plinkQC, PLNmodels, pmd, PNAR, polymapR, pomdp, pop, poppr, POSetR, prioritizr, ProjectManagement, propr, provGraphR, PSMatch, psSubpathway, psygenet2r, ptm, ptools, PubScore, PWIR, pwOmics, qdap, QFeatures, qgraph, qmtools, quanteda.textplots, quickPlot, R.temis, R3CPET, R6causal, RaceID, Radviz, rags2ridges, RandomWalkRestartMH, RavenR, RcextTools, RcmdrPlugin.RMTCJags, rcrimeanalysis, RCSL, RCX, rD3plot, RDS, ReactomePA, RedeR, regnet, RepertoiR, rescue, RevEcoR, rflexscan, rgexf, rhcoclust, RITAN, riverconn, RLassoCox, rmangal, rmcfs, rmonad, RNAseqNet, Rnmr1D, roads, robber, RobustIV, robustrao, roots, roprov, roughnet, RPANDA, rPref, rscc, rScudo, rsetse, rSpectral, rsppfp, rsyntax, RTN, safedata, saotd, SBGNview, sBIC, sbm, SBN, scalpel, scapGNN, scClassify, sccore, scDblFinder, scDHA, SCFA, scHOT, scINSIGHT, scMerge, ScorePlus, scran, scRepertoire, scRNAtools, scTensor, scTGIF, scTreeViz, secrlinear, SelectBoost, SEMID, SemNeT, semPlot, seqcombo, SeqDetect, seqHMM, SeqNet, SetRank, Seurat, sfcr, sfnetworks, SGSeq, sharp, sharpshootR, shazam, shock, sidier, sigmajs, SignacX, signnet, simer, simPATHy, SingleCellSignalR, singleCellTK, SIRE, skynet, slingshot, smallstuff, SmCCNet, SMITE, smotefamily, snahelper, snowboot, SNscan, SOAs, SoilR, solitude, SourceSet, spacejamr, SpaDES.core, Spaniel, spathial, SpatialCPie, SpatialGraph, spatialHeatmap, spatsoc, specr, SpidermiR, SplicingGraphs, spNetwork, SPONGE, spqdep, spreadr, spruce, SSN, sSNAPPY, StarBioTrek, statGraph, stemmatology, stminsights, STraTUS, STRINGdb, SubtypeDrug, supraHex, SurvHiDim, synaptome.db, SystemicR, targets, TAShiny, TDA, ternarynet, text2map, textrank, tidygraph, tidySEM, tilemaps, TimiRGeN, Tlasso, TOHM, tosr, TPEA, tradeSeq, TrajectoryUtils, transcriptogramer, TraRe, TreeAndLeaf, TreeDimensionTest, treefit, treemap, TRONCO, TSCAN, uSORT, VARDetect, veloviz, vennLasso, VertexSimilarity, ViSEAGO, vissE, vivid, VOSONDash, wdnet, WebGestaltR, whitechapelR, whomds, wiseR, wpa, wppi, wTO, XINA, xLLiM |
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agop, anocva, ape, autostats, BayesSpace, bcp, beadplexr, BiCausality, bio3d, biodbKegg, BiodiversityR, blackbox, bnlearn, BoomSpikeSlab, breathteststan, bsub, CellaRepertorium, cfid, ChromSCape, cito, clusterExperiment, CNORfeeder, CNVScope, ConnMatTools, countland, CovCombR, cppRouting, csdR, cspp, d3po, DAPAR, dartR, datapack, dbscan, deepdep, destiny, DGCA, dimRed, diverse, dodgr, dosearch, DramaAnalysis, dst, dynatopGIS, dyndimred, EBcoexpress, econullnetr, ecospat, ecpc, egor, eicm, epigraphdb, factoextra, FCPS, fsbrain, functiondepends, genscore, GGally, ggokabeito, ghypernet, goldfish, graphon, greed, HarmonizedTCGAData, HCAData, HelpersMG, hero, hydra, igraphdata, industRial, interplex, invertiforms, IOHanalyzer, isa2, iSEEu, isotracer, knitrBootstrap, latrend, lava, lfe, Libra, lionessR, loe, lolog, MACPET, maotai, MBNMAtime, metadat, MetNet, microeco, miic, MineICA, mistyR, mlr3pipelines, molic, MSG, multifear, nbTransmission, Nebulosa, net4pg, netcmc, netmediate, netmeta, netSmooth, NetworkInference, NetworkRiskMeasures, nosoi, oaqc, outbreaker2, PairViz, paramlink, pbixr, pcxn, pedmod, pedtools, pkgndep, Platypus, polmineR, polyqtlR, primer, protti, rangeMapper, raster, rBiopaxParser, rbmn, RcisTarget, RCy3, readsdr, rebook, recipes, ReDaMoR, repo, rgraph6, rIsing, rnetcarto, rquery, RScelestial, rtweet, rvinecopulib, Rwclust, Ryacas, Ryacas0, scDiffCom, schex, secuTrialR, sensitivity, SEPIRA, SFSI, SIMLR, simplifyEnrichment, sirt, SITH, sparsebnUtils, spatialreg, spdep, spdynmod, spectralGraphTopology, splatter, SplicingGraphs, SPOTlight, stabm, stagedtrees, stampr, stm, stplanr, surface, SynExtend, TCGAbiolinks, textmineR, TextMiningGUI, textplot, tgver, tidybulk, tidyjson, tidySingleCellExperiment, timeOmics, TNC, treeio, treespace, TunePareto, visNetwork, vkR, vocaldia, vosonSML, vsp, widyr, wildlifeDI, xgboost |