cancerGI: Analyses of Cancer Gene Interaction

Functions to perform the following analyses: i) inferring epistasis from RNAi double knockdown data; ii) identifying gene pairs of multiple mutation patterns; iii) assessing association between gene pairs and survival; and iv) calculating the smallworldness of a graph (e.g., a gene interaction network). Data and analyses are described in Wang, X., Fu, A. Q., McNerney, M. and White, K. P. (2014). Widespread genetic epistasis among breast cancer genes. Nature Communications. 5 4828. <doi:10.1038/ncomms5828>.

Version:	1.0.0
Depends:	R (≥ 2.10)
Imports:	systemfit, qvalue, survival, reshape2, igraph
Published:	2016-04-01
Author:	Audrey Qiuyan Fu and Xiaoyue Wang
Maintainer:	Audrey Q. Fu <audreyqyfu at gmail.com>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:	no
CRAN checks:	cancerGI results

Documentation:

Reference manual:

cancerGI.pdf

Downloads:

Package source:	cancerGI_1.0.0.tar.gz
Windows binaries:	r-devel: cancerGI_1.0.0.zip, r-release: cancerGI_1.0.0.zip, r-oldrel: cancerGI_1.0.0.zip
macOS binaries:	r-release (arm64): cancerGI_1.0.0.tgz, r-oldrel (arm64): cancerGI_1.0.0.tgz, r-release (x86_64): cancerGI_1.0.0.tgz, r-oldrel (x86_64): cancerGI_1.0.0.tgz

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