A fast and intuitive batch effect removal tool for single-cell data. BBKNN is originally used in the 'scanpy' python package, and now can be used with 'Seurat' seamlessly.
| Version: |
1.0.1 |
| Depends: |
R (≥ 4.1.0), methods, utils |
| Imports: |
dplyr, glmnet, Matrix, Rcpp, RcppAnnoy, reticulate, Rtsne, Seurat, SeuratObject, tidytable, uwot (≥ 0.1.14) |
| LinkingTo: |
Rcpp (≥ 1.0.8) |
| Suggests: |
knitr, rmarkdown, testthat (≥ 3.0.0), patchwork |
| Published: |
2022-08-23 |
| Author: |
Yuchen Li [aut, cre] |
| Maintainer: |
Yuchen Li <liyuchen_1995 at outlook.com> |
| BugReports: |
https://github.com/ycli1995/bbknnR/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/ycli1995/bbknnR,
https://github.com/Teichlab/bbknn,
https://bbknn.readthedocs.io/en/latest/ |
| NeedsCompilation: |
yes |
| Materials: |
README |
| CRAN checks: |
bbknnR results |