SeuratObject: Data Structures for Single Cell Data
Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031> for
more details.
| Version: |
4.1.1 |
| Depends: |
R (≥ 4.0.0) |
| Imports: |
future, future.apply, grDevices, grid, Matrix (≥ 1.3.3), methods, progressr, Rcpp (≥ 1.0.5), sp, rgeos, rlang (≥
0.4.7), stats, tools, utils |
| LinkingTo: |
Rcpp, RcppEigen |
| Suggests: |
ggplot2, testthat |
| Published: |
2022-08-29 |
| Author: |
Rahul Satija 
[aut],
Andrew Butler
[aut],
Paul Hoffman
[aut, cre],
Tim Stuart [aut],
Jeff Farrell [ctb],
Shiwei Zheng
[ctb],
Christoph Hafemeister
[ctb],
Patrick Roelli [ctb],
Yuhan Hao [ctb] |
| Maintainer: |
Paul Hoffman <seurat at nygenome.org> |
| BugReports: |
https://github.com/mojaveazure/seurat-object/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://mojaveazure.github.io/seurat-object/,
https://github.com/mojaveazure/seurat-object |
| NeedsCompilation: |
yes |
| Materials: |
NEWS |
| CRAN checks: |
SeuratObject results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: |
tidyseurat |
| Reverse imports: |
bbknnR, CAMML, GeomxTools, Platypus, sccomp, scpoisson, scRepertoire, Seurat, Signac, SpatialDecon |
| Reverse suggests: |
cellpypes, escape, Nebulosa, scOntoMatch, singleCellHaystack, SPOTlight, VAM |
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=SeuratObject
to link to this page.