purgeR: Inbreeding-Purging Estimation in Pedigreed Populations

Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load. In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included. See López-Cortegano E. (2021) <doi:10.1093/bioinformatics/btab599>.

Version:	1.5
Depends:	R (≥ 3.5.0)
Imports:	doSNOW (≥ 1.0.19), foreach (≥ 1.5.1), parallel, progress (≥ 1.2.2), Rcpp (≥ 1.0.5), RcppProgress (≥ 0.4.2)
LinkingTo:	Rcpp, RcppProgress
Suggests:	caret (≥ 6.0-86), coda (≥ 0.19-4), dplyr (≥ 1.0.0), e1071 (≥ 1.7-4), ggplot2 (≥ 3.3.1), glmnet (≥ 4.0-2), gtable (≥ 0.3.0), knitr (≥ 1.28), magrittr (≥ 1.5), pander (≥ 0.6.3), plyr (≥ 1.8.6), purrr (≥ 0.3.4), rmarkdown (≥ 2.2), scales (≥ 1.1.1), stringr (≥ 1.4.0), testthat (≥ 2.3.2), tibble (≥ 3.0.1), tidyr (≥ 1.1.0), tidyselect (≥ 1.1.0)
Published:	2022-07-11
Author:	Eugenio López-Cortegano [aut, cre]
Maintainer:	Eugenio López-Cortegano <elcortegano at gmail.com>
BugReports:	https://gitlab.com/elcortegano/purgeR/-/issues/
License:	GPL-2
URL:	https://gitlab.com/elcortegano/purgeR/
NeedsCompilation:	yes
Citation:	purgeR citation info
Materials:	NEWS
CRAN checks:	purgeR results

Documentation:

Reference manual:	purgeR.pdf
Vignettes:	Inbreeding and Purging Estimates purgeR tutorial

Downloads:

Package source:	purgeR_1.5.tar.gz
Windows binaries:	r-devel: purgeR_1.5.zip, r-release: purgeR_1.5.zip, r-oldrel: purgeR_1.5.zip
macOS binaries:	r-release (arm64): purgeR_1.5.tgz, r-oldrel (arm64): purgeR_1.5.tgz, r-release (x86_64): purgeR_1.5.tgz, r-oldrel (x86_64): purgeR_1.5.tgz
Old sources:	purgeR archive

Linking:

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