coloc: Colocalisation Tests of Two Genetic Traits

Performs the colocalisation tests described in Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>, Wallace (2020) <doi:10.1371/journal.pgen.1008720>, Wallace (2021) <doi:10.1101/2021.02.23.432421>.

Version:	5.1.0.1
Depends:	R (≥ 2.10)
Imports:	data.table, ggplot2, methods, viridis, stats, grDevices, susieR (≥ 0.11.33), utils
Suggests:	knitr, testthat, snpStats, mvtnorm, magrittr, rmarkdown
Published:	2022-07-05
Author:	Chris Wallace [aut, cre], Claudia Giambartolomei [aut], Vincent Plagnol [ctb]
Maintainer:	Chris Wallace <cew54 at cam.ac.uk>
BugReports:	https://github.com/chr1swallace/coloc/issues
License:	GPL-2 | GPL-3 [expanded from: GPL]
URL:	https://github.com/chr1swallace/coloc
NeedsCompilation:	no
Citation:	coloc citation info
Materials:	README NEWS
CRAN checks:	coloc results

Documentation:

Reference manual:	coloc.pdf
Vignettes:	Coloc: a package for colocalisation analyses Coloc: data structures Coloc: under a single causal variant assumption Coloc: sensitivity to prior values DEPRECATED Coloc: relaxing the single causal variant assumption Coloc: using SuSiE to relax the single causal variant assumption

Downloads:

Package source:	coloc_5.1.0.1.tar.gz
Windows binaries:	r-devel: coloc_5.1.0.1.zip, r-release: coloc_5.1.0.1.zip, r-oldrel: coloc_5.1.0.1.zip
macOS binaries:	r-release (arm64): coloc_5.1.0.1.tgz, r-oldrel (arm64): coloc_5.1.0.1.tgz, r-release (x86_64): coloc_5.1.0.1.tgz, r-oldrel (x86_64): coloc_5.1.0.1.tgz
Old sources:	coloc archive

Reverse dependencies:

Reverse imports:	RapidoPGS
Reverse suggests:	xQTLbiolinks

Linking:

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