User can query, download, and visualize of molecular quantitative trait locus and gene expression data from public resources through the application programming interface <https://gtexportal.org/home/api-docs/index.html> of 'GTEx'.
Version: | 1.2.2 |
Depends: | R (≥ 4.00) |
Imports: | BiocGenerics, cowplot (≥ 1.1.1), curl (≥ 4.3.2), data.table (≥ 1.14.2), DBI, GenomeInfoDb, GenomicRanges, ggplot2 (≥ 3.3.6), ggrepel, ggridges, httr, IRanges, jsonlite (≥ 1.7.2), PupillometryR, RMySQL, scales, stringr (≥ 1.4.0), SummarizedExperiment (≥ 1.4.0), utils (≥ 4.0.3), viridis |
Suggests: | coloc, knitr, rtracklayer, usethis |
Published: | 2022-08-27 |
Author: | Ruofan Ding [aut, cre], Xudong Zou [aut, ctb], Yangmei Qin [aut, ctb], Gao Wang [aut, ctb], Lei Li [aut, ctb, cph] |
Maintainer: | Ruofan Ding <dingruofan1 at foxmail.com> |
BugReports: | https://github.com/dingruofan/xQTLbiolinks/issues |
License: | GPL (≥ 3) |
URL: | https://github.com/dingruofan/xQTLbiolinks |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | xQTLbiolinks results |
Reference manual: | xQTLbiolinks.pdf |
Vignettes: |
Colocalization_analysis_with_xQTLbiolinks Quick_start eQTL_Specificity visualization |
Package source: | xQTLbiolinks_1.2.2.tar.gz |
Windows binaries: | r-devel: xQTLbiolinks_1.2.2.zip, r-release: xQTLbiolinks_1.2.2.zip, r-oldrel: xQTLbiolinks_1.2.2.zip |
macOS binaries: | r-release (arm64): xQTLbiolinks_1.2.2.tgz, r-oldrel (arm64): xQTLbiolinks_1.2.2.tgz, r-release (x86_64): xQTLbiolinks_1.2.2.tgz, r-oldrel (x86_64): xQTLbiolinks_1.2.2.tgz |
Old sources: | xQTLbiolinks archive |
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